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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1290ChIP-seq
  • 441ATAC-seq
  • 190DNase-seq
  • 76snATAC-seq
  • 67WGBS
  • 62total RNA-seq
  • 36pCHi-C
  • 24Hi-C
  • 5GRO-seq
  • 4Capture-C
  • 4FAIRE-seq
  • 2HiChIP
  • 2RRBS
  • 1DNAme array
  • 1whole genome sequencing assay
Assay category
  • 1290DNA binding
  • 711DNA accessibility
  • 70DNA methylation
  • 62Transcription
  • 243D chromatin structure
  • 1DNA sequencing
Target of assay
  • 883histone modification
  • 882histone
  • 449narrow histone mark
  • 432broad histone mark
  • 280control
  • 127transcription factor
  • 41RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 1recombinant protein
Date released
  • 292August, 2017
  • 223October, 2019
  • 203May, 2021
  • 186June, 2019
  • 140May, 2020
  • 140May, 2022
  • 127August, 2021
  • 111November, 2017
  • 106May, 2019
  • 104February, 2023
  • 79April, 2019
  • 67October, 2018
  • 52February, 2021
  • 46September, 2018
  • 40May, 2024
  • 38March, 2020
  • 35December, 2017
  • 35July, 2019
  • 25November, 2018
  • 24February, 2018
  • 23October, 2017
  • 18November, 2019
  • 13January, 2021
  • 11May, 2023
  • 11September, 2017
  • 9April, 2020
  • 9January, 2019
  • 8January, 2018
  • 7August, 2020
  • 7December, 2018
  • 5March, 2019
  • 3October, 2022
  • 3September, 2020
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
  • 1March, 2023
Available data
  • 1420bam
  • 1267bigWig
  • 1256bed narrowPeak
  • 547bigBed narrowPeak
  • 485fastq
  • 365tagAlign
  • 232bed bed3+
  • 217bed broadPeak
  • 186bigBed broadPeak
  • 101tsv
  • 101zippedFastqFolder
  • 64xls
  • 19hic
  • 17bedpe bed3+
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11bed bed3
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1txt
  • 1vcf
Organism
  • 2205Homo sapiens
Biosample type
  • 1344tissue
  • 546primary cell
  • 209in vitro differentiated cells
  • 101cell line
  • 5stem cell
Organ
  • 394pancreas
  • 246epithelium
  • 241brain
  • 216heart
  • 199liver
  • 197connective tissue
  • 193kidney
  • 129vasculature
  • 128blood vessel
  • 114limb
  • 90adipose tissue
  • 78artery
  • 75musculature of body
  • 42nerve
  • 38eye
  • 25spleen
  • 20embryo
  • 18ureter
  • 13blood
  • 13bodily fluid
  • 12bone element
  • 12skeleton
  • 10lung
  • 5gonad
  • 5ovary
  • 4vein
  • 2intestine
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 1891AMP
  • 163T1D
  • 141HPAP
  • 9LungMap
  • 1ITG
Genome assembly (visualization)
  • 1260GRCh38
  • 1257hg19
  • 5hg18
Lab
  • 1633AMP-T2D consortium
  • 254Kyle Gaulton, UCSD
  • 141Klaus Kaestner, Upenn
  • 78Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 21Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 9Xin Sun, UCSD
  • 4Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 79inconsistent ontology term
  • 33audit script error
Audit category:
  • 77missing controlled_by
Audit category:
  • 22inconsistent control read length
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

2205 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
WGBS
total RNA-seq
pCHi-C
Hi-C
GRO-seq
Capture-C
FAIRE-seq
HiChIP
RRBS
DNAme array
whole genome sequencing assay
tissue
liver109202311
islet of Langerhans714916431
kidney277513211
heart left ventricle3423411
coronary artery4362
primary cell
monocyte851521
pancreatic alpha cell1335251
pancreatic beta cell1223161
Langerhans cell48
CD8-positive, alpha-beta T cell33221
in vitro differentiated cells
adipocyte6741
embryonic stem cell4051
neural progenitor cell2110
pancreatic endoderm151
definitive endodermal cell51
cell line
HepG24311
EndoC_BH11317122
smooth muscle cell of the coronary artery48
GM1287841
Panc12
stem cell
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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