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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1530ChIP-seq
  • 531ATAC-seq
  • 212DNase-seq
  • 83snATAC-seq
  • 75WGBS
  • 68total RNA-seq
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 1DNAme array
  • 1whole genome sequencing assay
Assay category
  • 1530DNA binding
  • 831DNA accessibility
  • 97DNA methylation
  • 68Transcription
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 1011histone modification
  • 1010histone
  • 514transcription factor
  • 512narrow histone mark
  • 497broad histone mark
  • control
  • 114RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 335November, 2017
  • 266August, 2017
  • 249October, 2019
  • 210June, 2019
  • 208May, 2021
  • 173May, 2020
  • 140May, 2022
  • 121August, 2021
  • 110February, 2023
  • 97May, 2019
  • 81November, 2018
  • 73December, 2017
  • 66April, 2019
  • 63February, 2021
  • 56July, 2019
  • 49March, 2020
  • 46September, 2018
  • 45October, 2018
  • 40May, 2024
  • 39November, 2019
  • 31December, 2018
  • 26January, 2019
  • 20October, 2017
  • 16February, 2018
  • 16January, 2021
  • 11May, 2023
  • 9April, 2020
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 5September, 2017
  • 3October, 2022
  • 3September, 2020
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
  • 1March, 2023
Available data
  • 1811bed narrowPeak
  • 1809bigWig
  • 1745bam
  • 1036bigBed narrowPeak
  • 818fastq
  • 324tagAlign
  • 316bed broadPeak
  • 285bigBed broadPeak
  • 262bed bed3+
  • 119tsv
  • 101zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2632Homo sapiens
Biosample type
  • 1268tissue
  • 679primary cell
  • 459cell line
  • 219in vitro differentiated cells
  • 7stem cell
Organ
  • 493liver
  • 402pancreas
  • 293epithelium
  • 234brain
  • 214kidney
  • 211heart
  • 173connective tissue
  • 149vasculature
  • 144blood vessel
  • 102limb
  • 82musculature of body
  • 76artery
  • 66adipose tissue
  • 63blood
  • 63bodily fluid
  • 41eye
  • 31nerve
  • 20vein
  • 18ureter
  • 17spleen
  • 16embryo
  • 13bone element
  • 12skeleton
  • 10lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 2291AMP
  • 184T1D
  • 147HPAP
  • 9LungMap
  • 1ITG
Genome assembly (visualization)
  • 1843hg19
  • 1779GRCh38
  • 5hg18
Lab
  • 2038AMP-T2D consortium
  • 265Kyle Gaulton, UCSD
  • 147Klaus Kaestner, Upenn
  • 82Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 19Bing Ren, UCSD
  • 9Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 115inconsistent ontology term
  • 33audit script error
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
target.investigated_as!
  • control
BIOSAMPLE
ASSAY

2632 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
WGBS
total RNA-seq
pCHi-C
Hi-C
RRBS
FAIRE-seq
GRO-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
HiChIP
DNAme array
whole genome sequencing assay
tissue
islet of Langerhans5868174311
liver1022023111
kidney2175136111
coronary artery3362
heart left ventricle29234111
primary cell
monocyte8515211
pancreatic alpha cell735311
Langerhans cell48
pancreatic beta cell723161
CD8-positive, alpha-beta T cell30221
cell line
HepG2318115221
GM12878541
EndoC_BH113191232
smooth muscle cell of the coronary artery48
Panc1711
in vitro differentiated cells
adipocyte59811
embryonic stem cell3461
neural progenitor cell1410
hepatocyte14
pancreatic endoderm131
stem cell
hESC21
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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