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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1323total RNA-seq
  • 277single cell RNA-seq
  • 86RNA microarray
  • 7small RNA-seq
  • 6MeRIP-seq
  • 5STARR-seq
  • 1snDrop-seq
Assay category
  • 1607Transcription
Target of assay
  • 3control
  • 3nucleotide modification
Date released
  • 641February, 2021
  • 177August, 2021
  • 143May, 2020
  • 124July, 2018
  • 118May, 2021
  • 89August, 2017
  • 81February, 2023
  • 59May, 2022
  • 56September, 2020
  • 47September, 2023
  • 27July, 2019
  • 26September, 2018
  • 23October, 2019
  • 20November, 2019
  • 14February, 2018
  • 12March, 2020
  • 10April, 2018
  • 10December, 2019
  • 10November, 2020
  • 9April, 2020
  • 4May, 2023
  • 2June, 2018
  • 2October, 2018
  • 1November, 2018
Available data
  • 1266tsv
  • 1151bam
  • 1147bigWig
  • 280fastq
  • 152txt
  • 52zippedFastqFolder
  • 6csv
  • 2bed bed3+
Organism
  • 1705Homo sapiens
Biosample type
  • 1233tissue
  • 263primary cell
  • 119cell line
  • 90in vitro differentiated cells
Organ
  • 459connective tissue
  • 403pancreas
  • 392adipose tissue
  • 186liver
  • 152heart
  • 142bone element
  • 139epithelium
  • 122kidney
  • 62blood vessel
  • 62vasculature
  • 54artery
  • 18eye
  • 12embryo
  • 9lung
  • 2musculature of body
  • 1brain
Project
  • 1442AMP
  • 177HPAP
  • 47KPMP
  • 30T1D
  • 9LungMap
Genome assembly (visualization)
  • 1148hg19
  • 1146GRCh38
Lab
  • 1335AMP-T2D consortium
  • 177Klaus Kaestner, Upenn
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 37Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 9Xin Sun, UCSD
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 202inconsistent ontology term
  • 9audit script error
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

1705 results

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Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
small RNA-seq
MeRIP-seq
STARR-seq
snDrop-seq
tissue
adipose tissue382
islet of Langerhans282
liver1651
kidney4964
bone element84
primary cell
Langerhans cell85
pancreatic alpha cell521
exocrine cell39
monocyte28
pancreatic beta cell211
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1336
HepG292
H1-hESC8
HEK293T2
in vitro differentiated cells
cardiomyocytes47
cardiac precursors (cardiac muscle cell)19
adipocyte4
cardiomyocytes (cardiac muscle cell)22
pancreatic endoderm4
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