Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1414total RNA-seq
  • 363single cell RNA-seq
  • 86RNA microarray
  • 18small RNA-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 1STARR-seq
Assay category
  • 1795Transcription
Target of assay
  • 2control
  • 2nucleotide modification
Date released
  • 631February, 2021
  • 182May, 2021
  • 173August, 2021
  • 167July, 2018
  • 145May, 2020
  • 94February, 2023
  • 89August, 2017
  • 60May, 2022
  • 56September, 2020
  • 49April, 2018
  • 49July, 2019
  • 47September, 2023
  • 27September, 2018
  • 25February, 2020
  • 20November, 2019
  • 17October, 2019
  • 15February, 2018
  • 10March, 2020
  • 9April, 2020
  • 8November, 2020
  • 4May, 2023
  • 3August, 2018
  • 3December, 2019
  • 3June, 2018
  • 2October, 2018
  • 1November, 2018
Available data
  • 1430tsv
  • 1289bam
  • 1285bigWig
  • 365fastq
  • 156txt
  • 52zippedFastqFolder
  • 8csv
  • 2bed bed3+
Organism
  • 1889Homo sapiens
Biosample type
  • 1313tissue
  • 368primary cell
  • 114in vitro differentiated cells
  • 94cell line
Organ
  • 481pancreas
  • 475connective tissue
  • 400adipose tissue
  • 189epithelium
  • 182liver
  • 161heart
  • 146bone element
  • 122kidney
  • 65blood vessel
  • 65vasculature
  • 56artery
  • 20brain
  • 19eye
  • 9lung
  • 8musculature of body
  • 6embryo
  • 4skeleton
  • 3limb
  • 1nerve
  • 1spinal cord
Project
  • 1598AMP
  • 177HPAP
  • 58T1D
  • 47KPMP
  • 9LungMap
Genome assembly (visualization)
  • 1286hg19
  • 1284GRCh38
Lab
  • 1491AMP-T2D consortium
  • 177Klaus Kaestner, Upenn
  • 70Kyle Gaulton, UCSD
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 11Bing Ren, UCSD
  • 9Xin Sun, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 191inconsistent ontology term
  • 7audit script error
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

1889 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
small RNA-seq
MeRIP-seq
snDrop-seq
STARR-seq
tissue
adipose tissue382
islet of Langerhans29264
liver16611
kidney4964
bone element84
primary cell
Langerhans cell85
pancreatic alpha cell5212
monocyte52
exocrine cell39
pancreatic beta cell2112
in vitro differentiated cells
cardiomyocytes59
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
adipocyte5
cell line
smooth muscle cell of the coronary artery52
EndoC_BH131
HepG29
Synthesized DNA1
early embryonic cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego