Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 884ChIP-seq
Assay category
  • 884DNA binding
Target of assay
  • 884histone modification
  • 883histone
  • 481transcription factor
  • 458broad histone mark
  • 424narrow histone mark
  • 326control
  • 105RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
  • 3nucleotide modification
Date released
  • 187August, 2017
  • 155October, 2019
  • 92May, 2019
  • 90May, 2021
  • 88November, 2017
  • 60April, 2019
  • 35May, 2024
  • 32September, 2018
  • 31December, 2017
  • 30October, 2018
  • 27May, 2020
  • 16February, 2018
  • 13June, 2019
  • 10November, 2019
  • 7January, 2019
  • 7October, 2017
  • 3August, 2021
  • 1March, 2020
Available data
  • 747bigWig
  • 732bed narrowPeak
  • 663bam
  • 385bigBed narrowPeak
  • 218fastq
  • 214tagAlign
  • 65bed broadPeak
  • 30bigBed broadPeak
  • 10bed bed3+
Organism
  • 878Homo sapiens
Biosample type
  • 568tissue
  • 178primary cell
  • 98in vitro differentiated cells
  • 38cell line
  • 2stem cell
Organ
  • 150brain
  • 137pancreas
  • 100liver
  • 97heart
  • 90epithelium
  • 72connective tissue
  • 71vasculature
  • 70blood vessel
  • 49limb
  • 33musculature of body
  • 32adipose tissue
  • 30kidney
  • 24nerve
  • 20artery
  • 15vein
  • 12embryo
  • 6spleen
  • 4gonad
  • 4ovary
  • 3eye
  • 1blood
  • 1bodily fluid
  • 1lymph node
Project
  • 844AMP
  • 40T1D
Genome assembly (visualization)
  • 681GRCh38
  • 662hg19
Lab
  • 758AMP-T2D consortium
  • 88Kyle Gaulton, UCSD
  • 35Patrick T. Ellinor, Broad
  • 3Bing Ren, UCSD
Audit category:
  • 27inconsistent ontology term
Audit category:
  • 50missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

884 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
tissue
liver65
islet of Langerhans37
left cardiac atrium35
subcutaneous abdominal adipose tissue31
heart left ventricle24
primary cell
monocyte38
CD8-positive, alpha-beta T cell30
pancreatic endocrine cell23
endothelial cell of umbilical vein15
pancreatic ductal cell13
in vitro differentiated cells
adipocyte37
embryonic stem cell22
hepatocyte12
pancreatic endoderm10
definitive endodermal cell4
cell line
HepG218
EndoC_BH112
Panc17
GM128781
stem cell
hESC2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego