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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 436ChIP-seq
Assay category
  • 436DNA binding
Target of assay
  • 889histone modification
  • 888histone
  • 451narrow histone mark
  • 436broad histone mark
  • 283control
  • 127transcription factor
  • 41RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 2nucleotide modification
  • 1recombinant protein
Date released
  • 103August, 2017
  • 76May, 2021
  • 51May, 2019
  • 42November, 2017
  • 36April, 2019
  • 32October, 2019
  • 20May, 2024
  • 17September, 2018
  • 15October, 2018
  • 10October, 2017
  • 9August, 2021
  • 8February, 2018
  • 6November, 2019
  • 4January, 2019
  • 4June, 2019
  • 3December, 2017
Available data
  • 365bigWig
  • 361bed narrowPeak
  • 313bam
  • 197bigBed narrowPeak
  • 135tagAlign
  • 88fastq
  • 20bed broadPeak
  • 7bed bed3+
Organism
  • 432Homo sapiens
Biosample type
  • 283tissue
  • 101primary cell
  • 45in vitro differentiated cells
  • 7cell line
Organ
  • 70pancreas
  • 67brain
  • 53heart
  • 44connective tissue
  • 32limb
  • 31blood vessel
  • 31vasculature
  • 26epithelium
  • 24liver
  • 20adipose tissue
  • 16nerve
  • 15musculature of body
  • 13artery
  • 13kidney
  • 4spleen
  • 3embryo
Project
  • 392AMP
  • 44T1D
Genome assembly (visualization)
  • 333GRCh38
  • 309hg19
Lab
  • 341AMP-T2D consortium
  • 74Kyle Gaulton, UCSD
  • 20Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
Audit category:
  • 10inconsistent ontology term
Audit category:
  • 25missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

436 results

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Clear Filters
ChIP-seq
tissue
left cardiac atrium20
subcutaneous abdominal adipose tissue20
liver19
tibial nerve16
heart left ventricle14
primary cell
monocyte44
CD8-positive, alpha-beta T cell20
pancreatic endocrine cell11
pancreatic ductal cell6
mesenchymal stem cell4
in vitro differentiated cells
adipocyte20
embryonic stem cell11
neural progenitor cell7
pancreatic endoderm3
definitive endodermal cell1
cell line
EndoC_BH16
HepG21
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