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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 436ChIP-seq
Assay category
  • 436DNA binding
Target of assay
  • 889histone modification
  • 888histone
  • 451narrow histone mark
  • 436broad histone mark
  • 283control
  • 127transcription factor
  • 41RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 2nucleotide modification
  • 1recombinant protein
Date released
  • 103August, 2017
  • 76May, 2021
  • 51May, 2019
  • 42November, 2017
  • 36April, 2019
  • 32October, 2019
  • 20May, 2024
  • 17September, 2018
  • 15October, 2018
  • 10October, 2017
  • 9August, 2021
  • 8February, 2018
  • 6November, 2019
  • 4January, 2019
  • 4June, 2019
  • 3December, 2017
Available data
  • 365bigWig
  • 361bed narrowPeak
  • 313bam
  • 197bigBed narrowPeak
  • 135tagAlign
  • 88fastq
  • 20bed broadPeak
  • 7bed bed3+
Organism
  • 432Homo sapiens
Biosample type
  • 283tissue
  • 101primary cell
  • 45in vitro differentiated cells
  • 7cell line
Organ
  • 70pancreas
  • 67brain
  • 53heart
  • 44connective tissue
  • 32limb
  • 31blood vessel
  • 31vasculature
  • 26epithelium
  • 24liver
  • 20adipose tissue
  • 16nerve
  • 15musculature of body
  • 13artery
  • 13kidney
  • 4spleen
  • 3embryo
Project
  • 392AMP
  • 44T1D
Genome assembly (visualization)
  • 333GRCh38
  • 309hg19
Lab
  • 341AMP-T2D consortium
  • 74Kyle Gaulton, UCSD
  • 20Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
Audit category:
  • 10inconsistent ontology term
Audit category:
  • 25missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

436 results

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Clear Filters
ChIP-seq
tissue
left cardiac atrium20
subcutaneous abdominal adipose tissue20
liver19
tibial nerve16
heart left ventricle14
islet of Langerhans14
tibial artery13
layer of hippocampus12
skeletal muscle tissue12
brain10
kidney10
ascending aorta8
caudate nucleus8
endocrine pancreas8
germinal matrix8
pancreas8
substantia nigra8
temporal lobe8
angular gyrus7
aorta7
body of pancreas7
cingulate gyrus7
heart right ventricle7
middle frontal area 467
heart5
right atrium auricular region4
spleen4
muscle of leg3
right cardiac atrium3
right lobe of liver3
thoracic aorta3
primary cell
monocyte44
CD8-positive, alpha-beta T cell20
pancreatic endocrine cell11
pancreatic ductal cell6
mesenchymal stem cell4
pancreatic acinar cell4
epithelial cell of proximal tubule3
pancreatic alpha cell3
pancreatic beta cell3
hepatocyte1
naive thymus-derived CD4-positive, alpha-beta T cell1
neutrophil1
in vitro differentiated cells
adipocyte20
embryonic stem cell11
neural progenitor cell7
pancreatic endoderm3
definitive endodermal cell1
endocrine cell1
posterior foregut1
primitive gut cell1
cell line
EndoC_BH16
HepG21
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