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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 281ChIP-seq
  • 2MeRIP-seq
Assay category
  • 281DNA binding
Target of assay
  • 889histone modification
  • 888histone
  • 451narrow histone mark
  • 436broad histone mark
  • 283control
  • 127transcription factor
  • 41RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 2nucleotide modification
  • 1recombinant protein
Date released
  • 48August, 2017
  • 41November, 2017
  • 30October, 2019
  • 29October, 2018
  • 23May, 2020
  • 21May, 2019
  • 15December, 2017
  • 14April, 2019
  • 12August, 2021
  • 9May, 2021
  • 8February, 2018
  • 7June, 2019
  • 6September, 2017
  • 4December, 2018
  • 3February, 2021
  • 3January, 2019
  • 3November, 2018
  • 3October, 2017
  • 2November, 2019
  • 2November, 2020
Available data
  • 249bam
  • 126fastq
  • 66tagAlign
  • 10bigWig
  • 4bed bed3+
Organism
  • 282Homo sapiens
Biosample type
  • 184tissue
  • 39cell line
  • 32in vitro differentiated cells
  • 28primary cell
Organ
  • 77liver
  • 45pancreas
  • 35connective tissue
  • 28brain
  • 24adipose tissue
  • 24epithelium
  • 19heart
  • 19vasculature
  • 18blood vessel
  • 16limb
  • 11nerve
  • 9kidney
  • 8artery
  • 8spleen
  • 6embryo
  • 5musculature of body
  • 2blood
  • 2bodily fluid
  • 1eye
  • 1vein
Project
  • 283AMP
Genome assembly (visualization)
  • 14hg19
  • 4GRCh38
Lab
  • 269AMP-T2D consortium
  • 8Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 2Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 8inconsistent ontology term
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

283 results

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Clear Filters
ChIP-seq
MeRIP-seq
tissue
liver43
islet of Langerhans132
tibial nerve11
subcutaneous adipose tissue10
body of pancreas9
cell line
HepG230
EndoC_BH12
GM128782
Panc12
smooth muscle cell of the coronary artery2
in vitro differentiated cells
adipocyte8
neural progenitor cell7
embryonic stem cell6
pancreatic endoderm4
Hepatic endoderm2
primary cell
pancreatic alpha cell6
pancreatic beta cell5
CD8-positive, alpha-beta T cell3
cardiac fibroblast2
epithelial cell of proximal tubule2
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