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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 889ChIP-seq
Assay category
  • 889DNA binding
Target of assay
  • 889histone modification
  • 888histone
  • 451narrow histone mark
  • 436broad histone mark
  • 283control
  • 127transcription factor
  • 41RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 2nucleotide modification
  • 1recombinant protein
Date released
  • 187August, 2017
  • 156October, 2019
  • 139May, 2021
  • 81May, 2019
  • 70November, 2017
  • 59April, 2019
  • 35May, 2024
  • 32September, 2018
  • 27May, 2020
  • 23October, 2018
  • 20August, 2021
  • 16February, 2018
  • 12October, 2017
  • 10November, 2019
  • 7December, 2017
  • 7June, 2019
  • 6January, 2019
  • 2March, 2020
Available data
  • 745bigWig
  • 731bed narrowPeak
  • 657bam
  • 299tagAlign
  • 298bigBed narrowPeak
  • 168fastq
  • 35bed broadPeak
  • 15bed bed3+
  • 1tagAlign bed3+
Organism
  • 883Homo sapiens
Biosample type
  • 592tissue
  • 192primary cell
  • 92in vitro differentiated cells
  • 13cell line
Organ
  • 179brain
  • 135pancreas
  • 89heart
  • 77connective tissue
  • 69liver
  • 57epithelium
  • 45limb
  • 44blood vessel
  • 44vasculature
  • 32adipose tissue
  • 26kidney
  • 24musculature of body
  • 24nerve
  • 16artery
  • 10embryo
  • 6spleen
  • 4gonad
  • 4ovary
  • 2eye
  • 1lymph node
  • 1pituitary gland
Project
  • 803AMP
  • 86T1D
Genome assembly (visualization)
  • 684GRCh38
  • 660hg19
Lab
  • 717AMP-T2D consortium
  • 134Kyle Gaulton, UCSD
  • 35Patrick T. Ellinor, Broad
  • 3Bing Ren, UCSD
Audit category:
  • 21inconsistent ontology term
Audit category:
  • 53missing controlled_by
Audit category:
  • 12inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

889 results

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Clear Filters
ChIP-seq
tissue
liver60
islet of Langerhans51
left cardiac atrium35
subcutaneous abdominal adipose tissue31
tibial nerve24
primary cell
monocyte85
CD8-positive, alpha-beta T cell30
pancreatic endocrine cell23
pancreatic ductal cell13
pancreatic acinar cell8
in vitro differentiated cells
adipocyte37
embryonic stem cell22
neural progenitor cell14
pancreatic endoderm8
Hepatic endoderm2
cell line
EndoC_BH110
HepG23
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