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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 451ChIP-seq
Assay category
  • 451DNA binding
Target of assay
  • 889histone modification
  • 888histone
  • 451narrow histone mark
  • 436broad histone mark
  • 283control
  • 127transcription factor
  • 41RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 2nucleotide modification
  • 1recombinant protein
Date released
  • 124October, 2019
  • 82August, 2017
  • 63May, 2021
  • 30May, 2019
  • 28November, 2017
  • 27May, 2020
  • 23April, 2019
  • 15May, 2024
  • 15September, 2018
  • 11August, 2021
  • 8February, 2018
  • 8October, 2018
  • 4December, 2017
  • 4November, 2019
  • 3June, 2019
  • 2January, 2019
  • 2March, 2020
  • 2October, 2017
Available data
  • 378bigWig
  • 368bed narrowPeak
  • 342bam
  • 164tagAlign
  • 101bigBed narrowPeak
  • 78fastq
  • 15bed broadPeak
  • 8bed bed3+
  • 1tagAlign bed3+
Organism
  • 449Homo sapiens
Biosample type
  • 308tissue
  • 91primary cell
  • 46in vitro differentiated cells
  • 6cell line
Organ
  • 112brain
  • 65pancreas
  • 44liver
  • 36heart
  • 32connective tissue
  • 31epithelium
  • 13blood vessel
  • 13kidney
  • 13limb
  • 13vasculature
  • 12adipose tissue
  • 9musculature of body
  • 8nerve
  • 7embryo
  • 4gonad
  • 4ovary
  • 3artery
  • 2eye
  • 2spleen
  • 1lymph node
  • 1pituitary gland
Project
  • 409AMP
  • 42T1D
Genome assembly (visualization)
  • 349GRCh38
  • 349hg19
Lab
  • 374AMP-T2D consortium
  • 60Kyle Gaulton, UCSD
  • 15Patrick T. Ellinor, Broad
  • 2Bing Ren, UCSD
Audit category:
  • 11inconsistent ontology term
Audit category:
  • 28missing controlled_by
Audit category:
  • 8inconsistent control read length
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

451 results

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Clear Filters
ChIP-seq
tissue
liver40
islet of Langerhans37
left cardiac atrium15
subcutaneous abdominal adipose tissue11
kidney10
primary cell
monocyte41
pancreatic endocrine cell12
CD8-positive, alpha-beta T cell10
pancreatic ductal cell7
pancreatic acinar cell4
in vitro differentiated cells
adipocyte16
embryonic stem cell11
neural progenitor cell7
pancreatic endoderm5
Hepatic endoderm2
cell line
EndoC_BH14
HepG22
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