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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 127ChIP-seq
Assay category
  • 127DNA binding
Target of assay
  • 889histone modification
  • 888histone
  • 451narrow histone mark
  • 436broad histone mark
  • 283control
  • 127transcription factor
  • 41RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 2nucleotide modification
  • 1recombinant protein
Date released
  • 45August, 2017
  • 16May, 2021
  • 15October, 2018
  • 13December, 2017
  • 9August, 2021
  • 6April, 2019
  • 6November, 2018
  • 5May, 2024
  • 4May, 2019
  • 3December, 2018
  • 3February, 2021
  • 1June, 2019
  • 1November, 2019
Available data
  • 113bigWig
  • 101bam
  • 90bed narrowPeak
  • 82fastq
  • 37bigBed narrowPeak
  • 19bed bed3+
  • 7tagAlign
Organism
  • 127Homo sapiens
Biosample type
  • 63tissue
  • 47in vitro differentiated cells
  • 16cell line
  • 1primary cell
Organ
  • 40connective tissue
  • 19pancreas
  • 18liver
  • 17adipose tissue
  • 15heart
  • 6spleen
  • 5blood vessel
  • 5vasculature
  • 3artery
  • 3embryo
  • 2blood
  • 2bodily fluid
  • 2epithelium
  • 1kidney
Project
  • 127AMP
Genome assembly (visualization)
  • 108hg19
  • 104GRCh38
Lab
  • 101AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 9Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 5inconsistent ontology term
Audit category:
  • 24missing controlled_by
Audit category:
  • 10inconsistent control read length
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

127 results

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Clear Filters
ChIP-seq
tissue
white adipose tissue12
body of pancreas9
islet of Langerhans7
liver6
spleen6
in vitro differentiated cells
adipocyte22
embryonic stem cell12
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
cell line
HepG210
GM128782
smooth muscle cell of the coronary artery2
EndoC_BH11
iPSC derived cell line1
primary cell
cardiac fibroblast1
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