Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 647ChIP-seq
  • 241total RNA-seq
  • 195ATAC-seq
  • 95single cell RNA-seq
  • 49DNase-seq
  • 49pCHi-C
  • 19Hi-C
  • 19RRBS
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 8WGBS
  • 4FAIRE-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 647DNA binding
  • 347Transcription
  • 260DNA accessibility
  • 28DNA methylation
  • 193D chromatin structure
Target of assay
  • 420transcription factor
  • 261histone
  • 261histone modification
  • 153narrow histone mark
  • broad histone mark
  • 88recombinant protein
  • 82RNA binding protein
  • 77control
  • 32chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 287November, 2017
  • 144May, 2020
  • 127May, 2021
  • 101October, 2019
  • 64November, 2018
  • 60July, 2019
  • 58August, 2021
  • 54June, 2019
  • 53February, 2023
  • 50December, 2017
  • 48March, 2020
  • 45July, 2018
  • 44August, 2017
  • 43February, 2021
  • 39April, 2018
  • 28December, 2018
  • 25February, 2020
  • 24November, 2019
  • 21January, 2019
  • 10November, 2020
  • 7December, 2019
  • 7May, 2019
  • 5January, 2021
  • 5March, 2019
  • 4October, 2018
  • 3August, 2018
  • 3October, 2017
  • 3October, 2022
  • 2May, 2022
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 1058bam
  • 980bigWig
  • 634bed narrowPeak
  • 594fastq
  • 480bigBed narrowPeak
  • 371tsv
  • 109bed broadPeak
  • 107bigBed broadPeak
  • 100tagAlign
  • 95bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1371Homo sapiens
Biosample type
  • 451cell line
  • 429primary cell
  • 323tissue
  • 165in vitro differentiated cells
  • 3stem cell
Organ
  • 407liver
  • 187pancreas
  • 150epithelium
  • 89brain
  • 64connective tissue
  • 58blood
  • 58bodily fluid
  • 56kidney
  • 37heart
  • 35vasculature
  • 30blood vessel
  • 17adipose tissue
  • 17musculature of body
  • 12embryo
  • 10artery
  • 10vein
  • 9bone element
  • 8skeleton
  • 7eye
  • 6limb
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1219AMP
  • 142T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 1061hg19
  • 909GRCh38
Lab
  • 1172AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 126inconsistent ontology term
  • 28inconsistent control
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 25missing controlled_by
Audit category:
  • 27inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
replication_type!
  • unreplicated
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

1371 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
Hi-C
RRBS
snATAC-seq
small RNA-seq
MeRIP-seq
WGBS
FAIRE-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
snDrop-seq
DNAme array
cell line
HepG2327512112
GM1287856
EndoC_BH122263
Panc1711
H1-hESC8
primary cell
monocyte2826211
naive thymus-derived CD4-positive, alpha-beta T cell11221
CD4-positive, alpha-beta memory T cell22
pancreatic alpha cell1116
pancreatic beta cell1111
tissue
islet of Langerhans161037612134
liver3931111
heart231411
brain41121
kidney12141
in vitro differentiated cells
neural progenitor cell14710
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1911
adipocyte71811
cardiomyocytes12
stem cell
hESC2
mesenchymal stem cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego