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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 494ChIP-seq
  • 241total RNA-seq
  • 195ATAC-seq
  • 95single cell RNA-seq
  • 49DNase-seq
  • 49pCHi-C
  • 19Hi-C
  • 19RRBS
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 8WGBS
  • 4FAIRE-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 494DNA binding
  • 347Transcription
  • 260DNA accessibility
  • 28DNA methylation
  • 193D chromatin structure
Target of assay
  • 420transcription factor
  • histone
  • 261histone modification
  • 153narrow histone mark
  • 108broad histone mark
  • 88recombinant protein
  • 82RNA binding protein
  • 77control
  • 32chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 277November, 2017
  • 144May, 2020
  • 97May, 2021
  • 64November, 2018
  • 60July, 2019
  • 53February, 2023
  • 49August, 2021
  • 45July, 2018
  • 45March, 2020
  • 44June, 2019
  • 43February, 2021
  • 43October, 2019
  • 39April, 2018
  • 38December, 2017
  • 32August, 2017
  • 28December, 2018
  • 25February, 2020
  • 24November, 2019
  • 20January, 2019
  • 10November, 2020
  • 7December, 2019
  • 5January, 2021
  • 5March, 2019
  • 3August, 2018
  • 3May, 2019
  • 3October, 2022
  • 2May, 2022
  • 2October, 2017
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1October, 2018
  • 1September, 2018
Available data
  • 909bam
  • 832bigWig
  • 556fastq
  • 489bed narrowPeak
  • 430bigBed narrowPeak
  • 371tsv
  • 95bed broadPeak
  • 93bigBed broadPeak
  • 82bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 13tagAlign
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
Organism
  • 1218Homo sapiens
Biosample type
  • 438cell line
  • 372primary cell
  • 257tissue
  • 149in vitro differentiated cells
  • 2stem cell
Organ
  • 389liver
  • 171pancreas
  • 130epithelium
  • 61connective tissue
  • 57blood
  • 57bodily fluid
  • 54kidney
  • 51brain
  • 33heart
  • 22vasculature
  • 18blood vessel
  • 17adipose tissue
  • 13musculature of body
  • 11embryo
  • 9bone element
  • 8skeleton
  • 7artery
  • 6eye
  • 4limb
  • 4vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1097AMP
  • 111T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 912hg19
  • 761GRCh38
Lab
  • 1046AMP-T2D consortium
  • 127Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 116inconsistent ontology term
  • 28inconsistent control
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 21missing controlled_by
Audit category:
  • 19inconsistent control read length
  • 8inconsistent control run_type
  • 1inconsistent assembly
replication_type!
  • unreplicated
target.investigated_as!
  • histone
BIOSAMPLE
ASSAY

1218 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
Hi-C
RRBS
snATAC-seq
small RNA-seq
MeRIP-seq
WGBS
FAIRE-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
snDrop-seq
DNAme array
cell line
HepG2320512112
GM1287855
EndoC_BH12263
H1-hESC8
Panc1411
primary cell
monocyte26211
naive thymus-derived CD4-positive, alpha-beta T cell1221
CD4-positive, alpha-beta memory T cell22
pancreatic alpha cell1116
pancreatic beta cell1111
tissue
islet of Langerhans81037612134
liver3731111
heart31411
kidney12141
pancreas1111121
in vitro differentiated cells
neural progenitor cell7710
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1911
adipocyte71811
cardiomyocytes12
stem cell
hESC1
mesenchymal stem cell1
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