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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 602ChIP-seq
  • 241total RNA-seq
  • 195ATAC-seq
  • 95single cell RNA-seq
  • 49DNase-seq
  • 49pCHi-C
  • 19Hi-C
  • 19RRBS
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 8WGBS
  • 4FAIRE-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 602DNA binding
  • 347Transcription
  • 260DNA accessibility
  • 28DNA methylation
  • 193D chromatin structure
Target of assay
  • 420transcription factor
  • 261histone
  • 261histone modification
  • narrow histone mark
  • 108broad histone mark
  • 88recombinant protein
  • 82RNA binding protein
  • 77control
  • 32chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 285November, 2017
  • 144May, 2020
  • 118May, 2021
  • 66October, 2019
  • 64November, 2018
  • 60July, 2019
  • 57August, 2021
  • 53February, 2023
  • 52June, 2019
  • 50December, 2017
  • 45July, 2018
  • 45March, 2020
  • 44August, 2017
  • 43February, 2021
  • 39April, 2018
  • 28December, 2018
  • 25February, 2020
  • 24November, 2019
  • 20January, 2019
  • 10May, 2019
  • 10November, 2020
  • 7December, 2019
  • 6October, 2017
  • 5January, 2021
  • 5March, 2019
  • 5October, 2018
  • 3August, 2018
  • 3October, 2022
  • 2April, 2019
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 1010bam
  • 930bigWig
  • 592fastq
  • 583bed narrowPeak
  • 479bigBed narrowPeak
  • 371tsv
  • 111bed broadPeak
  • 109bigBed broadPeak
  • 94bed bed3+
  • 55tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
Organism
  • 1326Homo sapiens
Biosample type
  • 450cell line
  • 419primary cell
  • 287tissue
  • 167in vitro differentiated cells
  • 3stem cell
Organ
  • 408liver
  • 185pancreas
  • 149epithelium
  • 65connective tissue
  • 58brain
  • 57blood
  • 57bodily fluid
  • 56kidney
  • 37heart
  • 36vasculature
  • 32blood vessel
  • 18musculature of body
  • 17adipose tissue
  • 13vein
  • 12embryo
  • 9bone element
  • 8artery
  • 8skeleton
  • 6eye
  • 6limb
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1186AMP
  • 130T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 1009hg19
  • 856GRCh38
Lab
  • 1135AMP-T2D consortium
  • 146Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 124inconsistent ontology term
  • 28inconsistent control
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 22missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 8inconsistent control run_type
  • 2inconsistent assembly
replication_type!
  • unreplicated
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

1326 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
Hi-C
RRBS
snATAC-seq
small RNA-seq
MeRIP-seq
WGBS
FAIRE-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
snDrop-seq
DNAme array
cell line
HepG2328512112
GM1287855
EndoC_BH12263
Panc1811
H1-hESC8
primary cell
monocyte1926211
naive thymus-derived CD4-positive, alpha-beta T cell11221
CD4-positive, alpha-beta memory T cell22
pancreatic alpha cell1116
endothelial cell of umbilical vein10111
tissue
islet of Langerhans141037612134
liver4031111
brain81121
heart331411
kidney12141
in vitro differentiated cells
neural progenitor cell14710
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1911
adipocyte71811
cardiomyocytes12
stem cell
hESC2
mesenchymal stem cell1
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