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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 335ChIP-seq
  • 241total RNA-seq
  • 195ATAC-seq
  • 95single cell RNA-seq
  • 49DNase-seq
  • 49pCHi-C
  • 19Hi-C
  • 19RRBS
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 8WGBS
  • 4FAIRE-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 347Transcription
  • 335DNA binding
  • 260DNA accessibility
  • 28DNA methylation
  • 193D chromatin structure
Target of assay
  • transcription factor
  • 261histone
  • 261histone modification
  • 153narrow histone mark
  • 108broad histone mark
  • 88recombinant protein
  • 82RNA binding protein
  • 77control
  • 32chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 144May, 2020
  • 137May, 2021
  • 117October, 2019
  • 64August, 2021
  • 60July, 2019
  • 59June, 2019
  • 53February, 2023
  • 51November, 2017
  • 48March, 2020
  • 45July, 2018
  • 41February, 2021
  • 39April, 2018
  • 36August, 2017
  • 31December, 2017
  • 25February, 2020
  • 24November, 2019
  • 13May, 2019
  • 10November, 2020
  • 7December, 2019
  • 7January, 2019
  • 7October, 2017
  • 7October, 2018
  • 6November, 2018
  • 5January, 2021
  • 5March, 2019
  • 3August, 2018
  • 3December, 2018
  • 3October, 2022
  • 2May, 2022
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 753bam
  • 674bigWig
  • 371tsv
  • 338bed narrowPeak
  • 237fastq
  • 158bigBed narrowPeak
  • 140tagAlign
  • 89bed bed3+
  • 76bed broadPeak
  • 74bigBed broadPeak
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 1059Homo sapiens
Biosample type
  • 467primary cell
  • 306tissue
  • 164in vitro differentiated cells
  • 118cell line
  • 4stem cell
Organ
  • 194pancreas
  • 162epithelium
  • 102liver
  • 93brain
  • 58connective tissue
  • 48kidney
  • 45vasculature
  • 41blood vessel
  • 39heart
  • 22musculature of body
  • 19vein
  • 13adipose tissue
  • 13embryo
  • 9artery
  • 9blood
  • 9bodily fluid
  • 9bone element
  • 8limb
  • 8skeleton
  • 6eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 888AMP
  • 161T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 758hg19
  • 639GRCh38
Lab
  • 854AMP-T2D consortium
  • 162Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 8Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 125inconsistent ontology term
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 5missing controlled_by
Audit category:
  • 19inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
replication_type!
  • unreplicated
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

1059 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
Hi-C
RRBS
snATAC-seq
small RNA-seq
MeRIP-seq
WGBS
FAIRE-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
pancreatic alpha cell1116
tissue
islet of Langerhans161037612134
brain111121
heart531411
liver731111
body of pancreas71
in vitro differentiated cells
neural progenitor cell21710
cardiac precursors (cardiac muscle cell)1911
hepatocyte13
adipocyte11811
cardiomyocytes12
cell line
HepG248512112
EndoC_BH122263
Panc11111
H1-hESC8
GM128787
stem cell
hESC3
mesenchymal stem cell1
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