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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 82ChIP-seq
Assay category
  • 82DNA binding
Target of assay
  • 420transcription factor
  • 261histone
  • 261histone modification
  • 153narrow histone mark
  • 108broad histone mark
  • 88recombinant protein
  • 82RNA binding protein
  • 77control
  • 32chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 37November, 2017
  • 20November, 2018
  • 6January, 2019
  • 5May, 2021
  • 3August, 2017
  • 3December, 2017
  • 3June, 2019
  • 2December, 2018
  • 1April, 2019
  • 1May, 2019
  • 1October, 2018
Available data
  • 77bam
  • 74bigWig
  • 73bed narrowPeak
  • 73bigBed narrowPeak
  • 72fastq
  • 9bed broadPeak
  • 9bigBed broadPeak
  • 1bed bed3+
  • 1tar
Organism
  • 82Homo sapiens
Biosample type
  • 62cell line
  • 9primary cell
  • 7in vitro differentiated cells
  • 4tissue
Organ
  • 56liver
  • 9blood
  • 9bodily fluid
  • 7epithelium
  • 3brain
  • 3kidney
  • 2pancreas
  • 2vasculature
  • 1blood vessel
  • 1eye
Project
  • 82AMP
Genome assembly (visualization)
  • 73hg19
  • 69GRCh38
Lab
  • 77AMP-T2D consortium
  • 5Kyle Gaulton, UCSD
Audit category:
  • 2inconsistent ontology term
Audit category:
  • 3missing controlled_by
Audit category:
  • 6inconsistent control read length
  • 3inconsistent control run_type
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

82 results

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Clear Filters
ChIP-seq
cell line
HepG253
GM128789
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac muscle cell1
choroid plexus epithelial cell1
in vitro differentiated cells
embryonic stem cell5
hepatocyte2
tissue
islet of Langerhans1
kidney1
liver1
pancreas1
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