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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 108ChIP-seq
Assay category
  • 108DNA binding
Target of assay
  • 420transcription factor
  • 261histone
  • 261histone modification
  • 153narrow histone mark
  • 108broad histone mark
  • 88recombinant protein
  • 82RNA binding protein
  • 77control
  • 32chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 23October, 2019
  • 21May, 2021
  • 12August, 2017
  • 12December, 2017
  • 8August, 2021
  • 8June, 2019
  • 8November, 2017
  • 7May, 2019
  • 4October, 2017
  • 4October, 2018
  • 1April, 2019
Available data
  • 101bam
  • 98bigWig
  • 94bed narrowPeak
  • 49bigBed narrowPeak
  • 42tagAlign
  • 36fastq
  • 16bed broadPeak
  • 16bigBed broadPeak
  • 12bed bed3+
Organism
  • 108Homo sapiens
Biosample type
  • 47primary cell
  • 30tissue
  • 18in vitro differentiated cells
  • 12cell line
  • 1stem cell
Organ
  • 19epithelium
  • 19liver
  • 14blood vessel
  • 14pancreas
  • 14vasculature
  • 9vein
  • 7brain
  • 5musculature of body
  • 4connective tissue
  • 4heart
  • 2kidney
  • 2limb
  • 1artery
  • 1embryo
Project
  • 89AMP
  • 19T1D
Genome assembly (visualization)
  • 97hg19
  • 95GRCh38
Lab
  • 89AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
Audit category:
  • 8inconsistent ontology term
Audit category:
  • 1missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

108 results

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Clear Filters
ChIP-seq
primary cell
monocyte19
endothelial cell of umbilical vein9
skeletal muscle myoblast6
mesenchymal stem cell4
skeletal muscle satellite cell4
tissue
brain7
islet of Langerhans6
body of pancreas4
thoracic aorta4
heart3
in vitro differentiated cells
hepatocyte7
neural progenitor cell7
Posterior foregut1
definitive endodermal cell1
pancreatic endoderm1
cell line
HepG28
Panc14
stem cell
hESC1
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