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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 69ChIP-seq
  • 5MeRIP-seq
  • 3single cell RNA-seq
Assay category
  • 69DNA binding
  • 3Transcription
Target of assay
  • 420transcription factor
  • 261histone
  • 261histone modification
  • 153narrow histone mark
  • 108broad histone mark
  • 88recombinant protein
  • 82RNA binding protein
  • 77control
  • 32chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 30November, 2017
  • 9October, 2019
  • 8August, 2021
  • 7December, 2017
  • 5November, 2020
  • 4August, 2017
  • 3July, 2019
  • 3November, 2018
  • 2June, 2019
  • 2May, 2019
  • 2September, 2017
  • 1January, 2019
  • 1October, 2017
Available data
  • 71bam
  • 47fastq
  • 13bigWig
  • 11tagAlign
  • 9bed bed3+
  • 3tsv
Organism
  • 77Homo sapiens
Biosample type
  • 44cell line
  • 13in vitro differentiated cells
  • 10tissue
  • 9primary cell
  • 1stem cell
Organ
  • 34liver
  • 12pancreas
  • 7epithelium
  • 4blood
  • 4bodily fluid
  • 4brain
  • 3blood vessel
  • 3kidney
  • 3vasculature
  • 2connective tissue
  • 1artery
  • 1embryo
  • 1heart
  • 1limb
  • 1musculature of body
  • 1vein
Project
  • 77AMP
Genome assembly (visualization)
  • 22hg19
  • 12GRCh38
Lab
  • 72AMP-T2D consortium
  • 5Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 8inconsistent ontology term
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

77 results

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Clear Filters
ChIP-seq
MeRIP-seq
single cell RNA-seq
cell line
HepG230
GM128784
Panc14
EndoC_BH13
RCC 7860 HIF1a re-expression1
in vitro differentiated cells
neural progenitor cell7
Posterior foregut1
adipocyte1
definitive endodermal cell1
hepatocyte1
tissue
islet of Langerhans22
liver2
brain1
right atrium auricular region1
thoracic aorta1
primary cell
cerebellar granule cell2
Purkinje cell1
endothelial cell of umbilical vein1
hepatocyte1
mesenchymal stem cell1
stem cell
hESC1
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