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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 261ChIP-seq
Assay category
  • 261DNA binding
Target of assay
  • 420transcription factor
  • 261histone
  • 261histone modification
  • 153narrow histone mark
  • 108broad histone mark
  • 88recombinant protein
  • 82RNA binding protein
  • 77control
  • 32chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 81October, 2019
  • 51May, 2021
  • 24August, 2017
  • 24December, 2017
  • 18June, 2019
  • 18November, 2017
  • 17August, 2021
  • 11May, 2019
  • 7October, 2018
  • 5October, 2017
  • 3March, 2020
  • 1April, 2019
  • 1January, 2019
Available data
  • 250bam
  • 246bigWig
  • 239bed narrowPeak
  • 129tagAlign
  • 99bigBed narrowPeak
  • 74fastq
  • 30bed broadPeak
  • 30bigBed broadPeak
  • 25bed bed3+
  • 1tagAlign bed3+
Organism
  • 261Homo sapiens
Biosample type
  • 104primary cell
  • 96tissue
  • 34in vitro differentiated cells
  • 25cell line
  • 2stem cell
Organ
  • 45brain
  • 39epithelium
  • 37liver
  • 30pancreas
  • 27vasculature
  • 26blood vessel
  • 15vein
  • 9musculature of body
  • 8heart
  • 7connective tissue
  • 4artery
  • 4kidney
  • 4limb
  • 2embryo
  • 1blood
  • 1bodily fluid
  • 1eye
  • 1pituitary gland
Project
  • 211AMP
  • 50T1D
Genome assembly (visualization)
  • 246hg19
  • 243GRCh38
Lab
  • 215AMP-T2D consortium
  • 46Kyle Gaulton, UCSD
Audit category:
  • 18inconsistent ontology term
Audit category:
  • 5missing controlled_by
Audit category:
  • 19inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

261 results

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Clear Filters
ChIP-seq
primary cell
monocyte47
endothelial cell of umbilical vein15
skeletal muscle myoblast12
skeletal muscle satellite cell7
mesenchymal stem cell6
tissue
islet of Langerhans14
brain10
body of pancreas7
thoracic aorta6
heart5
in vitro differentiated cells
neural progenitor cell14
hepatocyte12
Posterior foregut2
definitive endodermal cell2
pancreatic endoderm2
cell line
HepG215
Panc17
EndoC_BH12
GM128781
stem cell
hESC2
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