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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 153ChIP-seq
Assay category
  • 153DNA binding
Target of assay
  • 420transcription factor
  • 261histone
  • 261histone modification
  • 153narrow histone mark
  • 108broad histone mark
  • 88recombinant protein
  • 82RNA binding protein
  • 77control
  • 32chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 58October, 2019
  • 30May, 2021
  • 12August, 2017
  • 12December, 2017
  • 10June, 2019
  • 10November, 2017
  • 9August, 2021
  • 4May, 2019
  • 3March, 2020
  • 3October, 2018
  • 1January, 2019
  • 1October, 2017
Available data
  • 149bam
  • 148bigWig
  • 145bed narrowPeak
  • 87tagAlign
  • 50bigBed narrowPeak
  • 38fastq
  • 14bed broadPeak
  • 14bigBed broadPeak
  • 13bed bed3+
  • 1tagAlign bed3+
Organism
  • 153Homo sapiens
Biosample type
  • 66tissue
  • 57primary cell
  • 16in vitro differentiated cells
  • 13cell line
  • 1stem cell
Organ
  • 38brain
  • 20epithelium
  • 18liver
  • 16pancreas
  • 13vasculature
  • 12blood vessel
  • 6vein
  • 4heart
  • 4musculature of body
  • 3artery
  • 3connective tissue
  • 2kidney
  • 2limb
  • 1blood
  • 1bodily fluid
  • 1embryo
  • 1eye
  • 1pituitary gland
Project
  • 122AMP
  • 31T1D
Genome assembly (visualization)
  • 149hg19
  • 148GRCh38
Lab
  • 126AMP-T2D consortium
  • 27Kyle Gaulton, UCSD
Audit category:
  • 10inconsistent ontology term
Audit category:
  • 4missing controlled_by
Audit category:
  • 8inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

153 results

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Clear Filters
ChIP-seq
tissue
islet of Langerhans8
body of pancreas3
brain3
angular gyrus2
heart2
primary cell
monocyte28
endothelial cell of umbilical vein6
skeletal muscle myoblast6
skeletal muscle satellite cell3
hepatocyte2
in vitro differentiated cells
neural progenitor cell7
hepatocyte5
Posterior foregut1
definitive endodermal cell1
pancreatic endoderm1
cell line
HepG27
Panc13
EndoC_BH12
GM128781
stem cell
hESC1
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