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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 420ChIP-seq
Assay category
  • 420DNA binding
Target of assay
  • 420transcription factor
  • 261histone
  • 261histone modification
  • 153narrow histone mark
  • 108broad histone mark
  • 88recombinant protein
  • 82RNA binding protein
  • 77control
  • 32chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 244November, 2017
  • 58November, 2018
  • 31December, 2017
  • 25December, 2018
  • 20August, 2017
  • 14January, 2019
  • 11May, 2021
  • 7October, 2019
  • 3June, 2019
  • 2August, 2021
  • 2February, 2021
  • 1April, 2019
  • 1May, 2019
  • 1October, 2018
Available data
  • 406bam
  • 404bigWig
  • 393fastq
  • 390bed narrowPeak
  • 371bigBed narrowPeak
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 18bed bed3+
  • 3tar
  • 2tagAlign
Organism
  • 420Homo sapiens
Biosample type
  • 345cell line
  • 47tissue
  • 19in vitro differentiated cells
  • 9primary cell
Organ
  • 324liver
  • 49blood
  • 49bodily fluid
  • 10connective tissue
  • 10kidney
  • 7epithelium
  • 7pancreas
  • 4adipose tissue
  • 4vasculature
  • 3blood vessel
  • 3brain
  • 2artery
  • 2heart
  • 1eye
Project
  • 420AMP
Genome assembly (visualization)
  • 400hg19
  • 365GRCh38
Lab
  • 407AMP-T2D consortium
  • 11Kyle Gaulton, UCSD
  • 2Bing Ren, UCSD
Audit category:
  • 28inconsistent control
  • 9inconsistent ontology term
Audit category:
  • 21missing controlled_by
Audit category:
  • 19inconsistent control read length
  • 8inconsistent control run_type
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

420 results

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Clear Filters
ChIP-seq
cell line
HepG2287
GM1287849
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
RCC 7860 vector2
tissue
liver35
islet of Langerhans6
white adipose tissue4
kidney1
pancreas1
in vitro differentiated cells
embryonic stem cell11
adipocyte6
hepatocyte2
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac muscle cell1
choroid plexus epithelial cell1
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