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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 190total RNA-seq
  • 138ChIP-seq
  • 105ATAC-seq
  • 89single cell RNA-seq
  • 28pCHi-C
  • 27DNase-seq
  • 11small RNA-seq
  • 9Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 290Transcription
  • 140DNA accessibility
  • 138DNA binding
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 133histone
  • 133histone modification
  • 90narrow histone mark
  • broad histone mark
  • 33transcription factor
  • 17control
  • 9RNA binding protein
  • 2nucleotide modification
Date released
  • 113May, 2021
  • 88May, 2020
  • 50October, 2019
  • 47February, 2023
  • 44July, 2018
  • 40August, 2021
  • 39April, 2018
  • 36July, 2019
  • 32March, 2020
  • 27August, 2017
  • 26June, 2019
  • 25February, 2020
  • 11February, 2021
  • 5March, 2019
  • 4November, 2020
  • 3August, 2018
  • 3December, 2017
  • 3October, 2017
  • 3October, 2022
  • 2January, 2021
  • 2May, 2022
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1November, 2019
  • 1October, 2018
  • 1September, 2018
Available data
  • 447bam
  • 431bigWig
  • 302tsv
  • 138bed narrowPeak
  • 123fastq
  • 86tagAlign
  • 61bed bed3+
  • 36bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 614Homo sapiens
Biosample type
  • 276primary cell
  • 232tissue
  • 105in vitro differentiated cells
  • 1stem cell
Organ
  • 132pancreas
  • 80epithelium
  • 67brain
  • 53connective tissue
  • 25heart
  • 19kidney
  • 17adipose tissue
  • 15liver
  • 9musculature of body
  • 8bone element
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 491AMP
  • 119T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 459hg19
  • 391GRCh38
Lab
  • 459AMP-T2D consortium
  • 135Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 47inconsistent ontology term
  • 4audit script error
Audit category:
  • 13missing controlled_by
Audit category:
  • 4inconsistent control read length
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

614 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
small RNA-seq
Hi-C
snATAC-seq
MeRIP-seq
FAIRE-seq
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte262821
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
tissue
islet of Langerhans10161861224
liver26111
heart21411
frontal cortex2211
brain212
in vitro differentiated cells
neural progenitor cell71410
embryonic stem cell51141
adipocyte1741
cardiomyocytes12
induced pluripotent stem cell9
stem cell
mesenchymal stem cell1
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