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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 190total RNA-seq
  • 105ATAC-seq
  • 89single cell RNA-seq
  • 48ChIP-seq
  • 28pCHi-C
  • 27DNase-seq
  • 11small RNA-seq
  • 9Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 290Transcription
  • 140DNA accessibility
  • 48DNA binding
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 133histone
  • histone modification
  • 90narrow histone mark
  • 43broad histone mark
  • 33transcription factor
  • 17control
  • 9RNA binding protein
  • 2nucleotide modification
Date released
  • 88May, 2020
  • 84May, 2021
  • 47February, 2023
  • 44July, 2018
  • 39April, 2018
  • 36July, 2019
  • 31August, 2021
  • 30March, 2020
  • 25February, 2020
  • 24June, 2019
  • 21August, 2017
  • 11February, 2021
  • 9October, 2019
  • 5March, 2019
  • 4November, 2020
  • 3August, 2018
  • 3December, 2017
  • 3October, 2022
  • 2January, 2021
  • 2May, 2022
  • 2November, 2018
  • 2October, 2017
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1November, 2019
  • 1October, 2018
  • 1September, 2018
Available data
  • 361bam
  • 345bigWig
  • 302tsv
  • 117fastq
  • 54bed narrowPeak
  • 53bed bed3+
  • 34bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 9tagAlign
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
Organism
  • 524Homo sapiens
Biosample type
  • 243primary cell
  • 182tissue
  • 98in vitro differentiated cells
  • 1stem cell
Organ
  • 124pancreas
  • 78epithelium
  • 51connective tissue
  • 34brain
  • 25heart
  • 19kidney
  • 17adipose tissue
  • 13liver
  • 9musculature of body
  • 8bone element
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 430AMP
  • 90T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 372hg19
  • 304GRCh38
Lab
  • 396AMP-T2D consortium
  • 108Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 45inconsistent ontology term
  • 4audit script error
Audit category:
  • 10missing controlled_by
Audit category:
  • 4inconsistent control read length
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

524 results

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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
pCHi-C
DNase-seq
small RNA-seq
Hi-C
snATAC-seq
MeRIP-seq
FAIRE-seq
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte2621
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
tissue
islet of Langerhans1018681224
liver21611
heart21411
frontal cortex2211
pancreas11111
in vitro differentiated cells
neural progenitor cell7107
embryonic stem cell54111
adipocyte1471
cardiomyocytes12
induced pluripotent stem cell9
stem cell
mesenchymal stem cell1
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