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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 190total RNA-seq
  • 105ATAC-seq
  • 91ChIP-seq
  • 89single cell RNA-seq
  • 28pCHi-C
  • 27DNase-seq
  • 11small RNA-seq
  • 9Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 290Transcription
  • 140DNA accessibility
  • 91DNA binding
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 133histone
  • 133histone modification
  • narrow histone mark
  • 43broad histone mark
  • 33transcription factor
  • 17control
  • 9RNA binding protein
  • 2nucleotide modification
Date released
  • 105May, 2021
  • 88May, 2020
  • 47February, 2023
  • 44July, 2018
  • 39April, 2018
  • 39August, 2021
  • 36July, 2019
  • 30March, 2020
  • 28June, 2019
  • 27August, 2017
  • 25February, 2020
  • 11February, 2021
  • 9October, 2019
  • 6October, 2017
  • 5March, 2019
  • 4November, 2020
  • 3August, 2018
  • 3December, 2017
  • 3October, 2022
  • 2January, 2021
  • 2May, 2022
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1November, 2019
  • 1October, 2018
  • 1September, 2018
Available data
  • 397bam
  • 381bigWig
  • 302tsv
  • 123fastq
  • 89bed narrowPeak
  • 60bed bed3+
  • 39tagAlign
  • 38bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
Organism
  • 567Homo sapiens
Biosample type
  • 269primary cell
  • 192tissue
  • 105in vitro differentiated cells
  • 1stem cell
Organ
  • 130pancreas
  • 79epithelium
  • 55connective tissue
  • 38brain
  • 25heart
  • 19kidney
  • 17adipose tissue
  • 14liver
  • 9musculature of body
  • 8bone element
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 454AMP
  • 109T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 407hg19
  • 340GRCh38
Lab
  • 420AMP-T2D consortium
  • 127Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 49inconsistent ontology term
  • 4audit script error
Audit category:
  • 11missing controlled_by
Audit category:
  • 4inconsistent control read length
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

567 results

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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
DNase-seq
small RNA-seq
Hi-C
snATAC-seq
MeRIP-seq
FAIRE-seq
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte262191
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
tissue
islet of Langerhans10181461224
liver26111
heart21411
brain152
frontal cortex2211
in vitro differentiated cells
neural progenitor cell71014
embryonic stem cell54111
adipocyte1471
cardiomyocytes12
induced pluripotent stem cell9
stem cell
mesenchymal stem cell1
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