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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 190total RNA-seq
  • 148ChIP-seq
  • 105ATAC-seq
  • 89single cell RNA-seq
  • 28pCHi-C
  • 27DNase-seq
  • 11small RNA-seq
  • 9Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 290Transcription
  • 148DNA binding
  • 140DNA accessibility
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 133histone
  • 133histone modification
  • 90narrow histone mark
  • 43broad histone mark
  • transcription factor
  • 17control
  • 9RNA binding protein
  • 2nucleotide modification
Date released
  • 123May, 2021
  • 88May, 2020
  • 50October, 2019
  • 48August, 2021
  • 47February, 2023
  • 44July, 2018
  • 39April, 2018
  • 36July, 2019
  • 32March, 2020
  • 30June, 2019
  • 25February, 2020
  • 15August, 2017
  • 11February, 2021
  • 7October, 2017
  • 5March, 2019
  • 4November, 2020
  • 3August, 2018
  • 3October, 2022
  • 2January, 2021
  • 2May, 2022
  • 2November, 2018
  • 2September, 2017
  • 1December, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1November, 2019
  • 1September, 2018
Available data
  • 461bam
  • 446bigWig
  • 302tsv
  • 162bed narrowPeak
  • 116tagAlign
  • 108fastq
  • 50bed bed3+
  • 37bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 624Homo sapiens
Biosample type
  • 302primary cell
  • 226tissue
  • 95in vitro differentiated cells
  • 1stem cell
Organ
  • 131pancreas
  • 81epithelium
  • 71brain
  • 47connective tissue
  • 25heart
  • 18kidney
  • 13adipose tissue
  • 12liver
  • 9musculature of body
  • 8bone element
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 482AMP
  • 138T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 473hg19
  • 406GRCh38
Lab
  • 461AMP-T2D consortium
  • 143Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 51inconsistent ontology term
  • 4audit script error
Audit category:
  • 4missing controlled_by
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

624 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
small RNA-seq
Hi-C
snATAC-seq
MeRIP-seq
FAIRE-seq
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte264721
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
tissue
islet of Langerhans10161861224
brain612
heart21411
liver22111
frontal cortex2211
in vitro differentiated cells
neural progenitor cell72110
cardiomyocytes12
embryonic stem cell541
induced pluripotent stem cell9
adipocyte1141
stem cell
mesenchymal stem cell1
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