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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 509ChIP-seq
  • 90ATAC-seq
  • 51total RNA-seq
  • 22DNase-seq
  • 21pCHi-C
  • 19RRBS
  • 10Hi-C
  • 8WGBS
  • 7snATAC-seq
  • 6MeRIP-seq
  • 6single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 1FAIRE-seq
Assay category
  • 509DNA binding
  • 120DNA accessibility
  • 57Transcription
  • 27DNA methylation
  • 103D chromatin structure
Target of assay
  • 387transcription factor
  • 128histone
  • 128histone modification
  • 88recombinant protein
  • 73RNA binding protein
  • broad histone mark
  • 63narrow histone mark
  • 60control
  • 32chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 287November, 2017
  • 62November, 2018
  • 56May, 2020
  • 51October, 2019
  • 47December, 2017
  • 32February, 2021
  • 28December, 2018
  • 28June, 2019
  • 24July, 2019
  • 23November, 2019
  • 21January, 2019
  • 18August, 2021
  • 17August, 2017
  • 16March, 2020
  • 14May, 2021
  • 7December, 2019
  • 7May, 2019
  • 6February, 2023
  • 6November, 2020
  • 3January, 2021
  • 3October, 2018
  • 1July, 2018
Available data
  • 611bam
  • 549bigWig
  • 496bed narrowPeak
  • 471fastq
  • 444bigBed narrowPeak
  • 83bed broadPeak
  • 83bigBed broadPeak
  • 69tsv
  • 34bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 14tagAlign
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 757Homo sapiens
Biosample type
  • 451cell line
  • 153primary cell
  • 91tissue
  • 60in vitro differentiated cells
  • 2stem cell
Organ
  • 392liver
  • 70epithelium
  • 56blood
  • 56bodily fluid
  • 55pancreas
  • 37kidney
  • 28vasculature
  • 23blood vessel
  • 22brain
  • 12heart
  • 11connective tissue
  • 10embryo
  • 9vein
  • 8musculature of body
  • 6artery
  • 4eye
  • 3limb
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 728AMP
  • 23T1D
  • 6HPAP
Genome assembly (visualization)
  • 602hg19
  • 518GRCh38
Lab
  • 713AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 79inconsistent ontology term
  • 28inconsistent control
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

757 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
RRBS
Hi-C
WGBS
snATAC-seq
MeRIP-seq
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
cell line
HepG2327152112
GM1287856
EndoC_BH122263
Panc1711
H1-hESC8
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
skeletal muscle myoblast9121
macrophage11
endothelial cell of umbilical vein711
tissue
liver3311
islet of Langerhans1911
kidney14
brain211
body of pancreas3
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1191
cardiomyocytes (cardiac muscle cell)12122
hepatocyte8
adipocyte41
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
stem cell
hESC2
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