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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 520ChIP-seq
  • 90ATAC-seq
  • 51total RNA-seq
  • 22DNase-seq
  • 21pCHi-C
  • 19RRBS
  • 10Hi-C
  • 8WGBS
  • 7snATAC-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3MeRIP-seq
  • 3single cell RNA-seq
  • 1FAIRE-seq
Assay category
  • 520DNA binding
  • 120DNA accessibility
  • 54Transcription
  • 27DNA methylation
  • 103D chromatin structure
Target of assay
  • 387transcription factor
  • 128histone
  • 128histone modification
  • 88recombinant protein
  • 73RNA binding protein
  • 65broad histone mark
  • 63narrow histone mark
  • control
  • 32chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 265November, 2017
  • 65October, 2019
  • 59November, 2018
  • 56May, 2020
  • 53December, 2017
  • 32February, 2021
  • 31June, 2019
  • 28December, 2018
  • 23November, 2019
  • 21August, 2017
  • 21July, 2019
  • 20January, 2019
  • 18August, 2021
  • 16March, 2020
  • 14May, 2021
  • 12May, 2019
  • 7December, 2019
  • 7October, 2018
  • 6February, 2023
  • 3January, 2021
  • 3November, 2020
  • 1April, 2019
  • 1July, 2018
Available data
  • 619bam
  • 598bigWig
  • 555bed narrowPeak
  • 489bigBed narrowPeak
  • 459fastq
  • 99bed broadPeak
  • 99bigBed broadPeak
  • 66tsv
  • 34bed bed3+
  • 24tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 762Homo sapiens
Biosample type
  • 419cell line
  • 167primary cell
  • 108tissue
  • 66in vitro differentiated cells
  • 2stem cell
Organ
  • 379liver
  • 82epithelium
  • 55pancreas
  • 52blood
  • 52bodily fluid
  • 39vasculature
  • 36kidney
  • 34blood vessel
  • 22brain
  • 17vein
  • 15heart
  • 12musculature of body
  • 11connective tissue
  • 10embryo
  • 6artery
  • 4eye
  • 4limb
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 733AMP
  • 23T1D
  • 6HPAP
Genome assembly (visualization)
  • 646hg19
  • 569GRCh38
Lab
  • 721AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
  • 4Katalin Susztak, Upenn
  • 3Rohit N. Kulkarni, M.D., Ph.D.
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 76inconsistent ontology term
  • 28inconsistent control
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 34inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
target.investigated_as!
  • control
BIOSAMPLE
ASSAY

762 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
RRBS
Hi-C
WGBS
snATAC-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
MeRIP-seq
single cell RNA-seq
FAIRE-seq
cell line
HepG2305152112
GM1287852
EndoC_BH122233
Panc1711
H1-hESC8
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
skeletal muscle myoblast14121
endothelial cell of umbilical vein1511
macrophage11
tissue
liver3611
islet of Langerhans1911
body of pancreas7
brain511
heart51
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1191
hepatocyte14
cardiomyocytes (cardiac muscle cell)12122
adipocyte41
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
stem cell
hESC2
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