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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 446ChIP-seq
  • 90ATAC-seq
  • 51total RNA-seq
  • 22DNase-seq
  • 21pCHi-C
  • 19RRBS
  • 10Hi-C
  • 8WGBS
  • 7snATAC-seq
  • 6MeRIP-seq
  • 6single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 1FAIRE-seq
Assay category
  • 446DNA binding
  • 120DNA accessibility
  • 57Transcription
  • 27DNA methylation
  • 103D chromatin structure
Target of assay
  • 387transcription factor
  • 128histone
  • histone modification
  • 88recombinant protein
  • 73RNA binding protein
  • 65broad histone mark
  • 63narrow histone mark
  • 60control
  • 32chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 277November, 2017
  • 62November, 2018
  • 56May, 2020
  • 35December, 2017
  • 34October, 2019
  • 32February, 2021
  • 28December, 2018
  • 24July, 2019
  • 23November, 2019
  • 20January, 2019
  • 20June, 2019
  • 18August, 2021
  • 15March, 2020
  • 13May, 2021
  • 11August, 2017
  • 7December, 2019
  • 6February, 2023
  • 6November, 2020
  • 3January, 2021
  • 3May, 2019
  • 1July, 2018
Available data
  • 548bam
  • 487bigWig
  • 439fastq
  • 435bed narrowPeak
  • 396bigBed narrowPeak
  • 69bed broadPeak
  • 69bigBed broadPeak
  • 69tsv
  • 29bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tagAlign
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 694Homo sapiens
Biosample type
  • 438cell line
  • 129primary cell
  • 75tissue
  • 51in vitro differentiated cells
  • 1stem cell
Organ
  • 376liver
  • 55blood
  • 55bodily fluid
  • 52epithelium
  • 47pancreas
  • 35kidney
  • 17brain
  • 15vasculature
  • 11blood vessel
  • 10connective tissue
  • 9embryo
  • 8heart
  • 4musculature of body
  • 3artery
  • 3eye
  • 3vein
  • 1bone element
  • 1bone marrow
  • 1limb
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 667AMP
  • 21T1D
  • 6HPAP
Genome assembly (visualization)
  • 540hg19
  • 457GRCh38
Lab
  • 650AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 71inconsistent ontology term
  • 28inconsistent control
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 11missing controlled_by
Audit category:
  • 15inconsistent control read length
  • 8inconsistent control run_type
  • 1inconsistent assembly
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

694 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
RRBS
Hi-C
WGBS
snATAC-seq
MeRIP-seq
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
cell line
HepG2320152112
GM1287855
EndoC_BH12263
H1-hESC8
Panc1411
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
macrophage11
skeletal muscle myoblast3121
hepatocyte51
tissue
liver3111
islet of Langerhans1911
kidney14
pancreas12
brain11
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1191
cardiomyocytes (cardiac muscle cell)12122
adipocyte41
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
hepatocyte3
stem cell
hESC1
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