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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 187ChIP-seq
  • 90ATAC-seq
  • 51total RNA-seq
  • 22DNase-seq
  • 21pCHi-C
  • 19RRBS
  • 10Hi-C
  • 8WGBS
  • 7snATAC-seq
  • 6MeRIP-seq
  • 6single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 1FAIRE-seq
Assay category
  • 187DNA binding
  • 120DNA accessibility
  • 57Transcription
  • 27DNA methylation
  • 103D chromatin structure
Target of assay
  • transcription factor
  • 128histone
  • 128histone modification
  • 88recombinant protein
  • 73RNA binding protein
  • 65broad histone mark
  • 63narrow histone mark
  • 60control
  • 32chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 67October, 2019
  • 56May, 2020
  • 51November, 2017
  • 30December, 2017
  • 30February, 2021
  • 29June, 2019
  • 24July, 2019
  • 23November, 2019
  • 21August, 2017
  • 16August, 2021
  • 16March, 2020
  • 14May, 2021
  • 13May, 2019
  • 7December, 2019
  • 7January, 2019
  • 7October, 2018
  • 6February, 2023
  • 6November, 2020
  • 4November, 2018
  • 3December, 2018
  • 3January, 2021
  • 1April, 2019
  • 1July, 2018
Available data
  • 292bam
  • 228bigWig
  • 176bed narrowPeak
  • 129fastq
  • 121bigBed narrowPeak
  • 69tsv
  • 50bed broadPeak
  • 50bigBed broadPeak
  • 39bed bed3+
  • 24tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 3txt
  • 2ibed
  • 1bed bed3
  • 1tar
Organism
  • 435Homo sapiens
Biosample type
  • 165primary cell
  • 118cell line
  • 80tissue
  • 69in vitro differentiated cells
  • 3stem cell
Organ
  • 90liver
  • 81epithelium
  • 63pancreas
  • 38vasculature
  • 34blood vessel
  • 30kidney
  • 22brain
  • 18vein
  • 14heart
  • 13musculature of body
  • 11connective tissue
  • 11embryo
  • 7blood
  • 7bodily fluid
  • 5artery
  • 5limb
  • 3eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 406AMP
  • 23T1D
  • 6HPAP
Genome assembly (visualization)
  • 285hg19
  • 233GRCh38
Lab
  • 393AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 74inconsistent ontology term
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 1missing controlled_by
Audit category:
  • 19inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

435 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
RRBS
Hi-C
WGBS
snATAC-seq
MeRIP-seq
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
endothelial cell of umbilical vein1611
skeletal muscle myoblast13121
macrophage11
cell line
HepG248152112
EndoC_BH122263
Panc11111
H1-hESC8
GM128787
tissue
islet of Langerhans1911
body of pancreas7
brain511
liver511
thoracic aorta7
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1191
hepatocyte13
cardiomyocytes (cardiac muscle cell)12122
adipocyte41
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
stem cell
hESC3
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