Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 54ChIP-seq
  • 3MeRIP-seq
  • 3single cell RNA-seq
Assay category
  • 54DNA binding
  • 3Transcription
Target of assay
  • 387transcription factor
  • 128histone
  • 128histone modification
  • 88recombinant protein
  • 73RNA binding protein
  • 65broad histone mark
  • 63narrow histone mark
  • 60control
  • 32chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 30November, 2017
  • 9October, 2019
  • 6December, 2017
  • 3July, 2019
  • 3November, 2018
  • 3November, 2020
  • 2August, 2017
  • 2May, 2019
  • 1January, 2019
  • 1June, 2019
Available data
  • 57bam
  • 42fastq
  • 13bigWig
  • 5bed bed3+
  • 3tsv
  • 2tagAlign
Organism
  • 60Homo sapiens
Biosample type
  • 44cell line
  • 7primary cell
  • 5in vitro differentiated cells
  • 3tissue
  • 1stem cell
Organ
  • 31liver
  • 8pancreas
  • 6epithelium
  • 4blood
  • 4bodily fluid
  • 3blood vessel
  • 3brain
  • 3kidney
  • 3vasculature
  • 1artery
  • 1embryo
  • 1heart
  • 1limb
  • 1musculature of body
  • 1vein
Project
  • 60AMP
Genome assembly (visualization)
  • 18hg19
  • 8GRCh38
Lab
  • 57AMP-T2D consortium
  • 3Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 7inconsistent ontology term
BIOSAMPLE
ASSAY

60 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
MeRIP-seq
single cell RNA-seq
cell line
HepG230
GM128784
Panc14
EndoC_BH13
RCC 7860 HIF1a re-expression1
primary cell
cerebellar granule cell2
Purkinje cell1
endothelial cell of umbilical vein1
pancreatic beta cell1
skeletal muscle myoblast1
in vitro differentiated cells
Posterior foregut1
definitive endodermal cell1
hepatocyte1
pancreatic endoderm1
primitive gut cell1
tissue
right atrium auricular region1
thoracic aorta1
tibial artery1
stem cell
hESC1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego