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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 128ChIP-seq
Assay category
  • 128DNA binding
Target of assay
  • 387transcription factor
  • 128histone
  • 128histone modification
  • 88recombinant protein
  • 73RNA binding protein
  • 65broad histone mark
  • 63narrow histone mark
  • 60control
  • 32chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 40October, 2019
  • 24December, 2017
  • 18November, 2017
  • 12August, 2017
  • 12June, 2019
  • 11May, 2019
  • 7October, 2018
  • 1April, 2019
  • 1January, 2019
  • 1March, 2020
  • 1May, 2021
Available data
  • 128bam
  • 124bigWig
  • 120bed narrowPeak
  • 93bigBed narrowPeak
  • 62fastq
  • 30bed broadPeak
  • 30bigBed broadPeak
  • 22tagAlign
  • 10bed bed3+
Organism
  • 128Homo sapiens
Biosample type
  • 45primary cell
  • 36tissue
  • 25cell line
  • 20in vitro differentiated cells
  • 2stem cell
Organ
  • 36epithelium
  • 34liver
  • 27vasculature
  • 26blood vessel
  • 16pancreas
  • 15vein
  • 9musculature of body
  • 8brain
  • 8heart
  • 4artery
  • 4kidney
  • 4limb
  • 2embryo
  • 1blood
  • 1bodily fluid
  • 1connective tissue
  • 1eye
Project
  • 126AMP
  • 2T1D
Genome assembly (visualization)
  • 124hg19
  • 120GRCh38
Lab
  • 128AMP-T2D consortium
Audit category:
  • 12inconsistent ontology term
Audit category:
  • 1missing controlled_by
Audit category:
  • 19inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

128 results

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Clear Filters
ChIP-seq
primary cell
endothelial cell of umbilical vein15
skeletal muscle myoblast12
skeletal muscle satellite cell7
kidney epithelial cell3
astrocyte of the cerebellum1
tissue
body of pancreas7
thoracic aorta6
brain5
heart5
liver5
cell line
HepG215
Panc17
EndoC_BH12
GM128781
in vitro differentiated cells
hepatocyte12
Posterior foregut2
definitive endodermal cell2
pancreatic endoderm2
primitive gut cell2
stem cell
hESC2
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