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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 63ChIP-seq
Assay category
  • 63DNA binding
Target of assay
  • 387transcription factor
  • 128histone
  • 128histone modification
  • 88recombinant protein
  • 73RNA binding protein
  • 65broad histone mark
  • 63narrow histone mark
  • 60control
  • 32chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 17October, 2019
  • 12December, 2017
  • 10November, 2017
  • 8June, 2019
  • 6August, 2017
  • 4May, 2019
  • 3October, 2018
  • 1January, 2019
  • 1March, 2020
  • 1May, 2021
Available data
  • 63bam
  • 62bigWig
  • 61bed narrowPeak
  • 48bigBed narrowPeak
  • 32fastq
  • 14bed broadPeak
  • 14bigBed broadPeak
  • 10tagAlign
  • 5bed bed3+
Organism
  • 63Homo sapiens
Biosample type
  • 24primary cell
  • 16tissue
  • 13cell line
  • 9in vitro differentiated cells
  • 1stem cell
Organ
  • 18epithelium
  • 16liver
  • 13vasculature
  • 12blood vessel
  • 8pancreas
  • 6vein
  • 5brain
  • 4heart
  • 4musculature of body
  • 3artery
  • 2kidney
  • 2limb
  • 1blood
  • 1bodily fluid
  • 1connective tissue
  • 1embryo
  • 1eye
Project
  • 61AMP
  • 2T1D
Genome assembly (visualization)
  • 62hg19
  • 61GRCh38
Lab
  • 63AMP-T2D consortium
Audit category:
  • 8inconsistent ontology term
Audit category:
  • 1missing controlled_by
Audit category:
  • 8inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

63 results

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Clear Filters
ChIP-seq
primary cell
endothelial cell of umbilical vein6
skeletal muscle myoblast6
skeletal muscle satellite cell3
astrocyte of the cerebellum1
brain microvascular endothelial cell1
tissue
body of pancreas3
brain2
heart2
liver2
right lobe of liver2
cell line
HepG27
Panc13
EndoC_BH12
GM128781
in vitro differentiated cells
hepatocyte5
Posterior foregut1
definitive endodermal cell1
pancreatic endoderm1
primitive gut cell1
stem cell
hESC1
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