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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 387ChIP-seq
Assay category
  • 387DNA binding
Target of assay
  • 387transcription factor
  • 128histone
  • 128histone modification
  • 88recombinant protein
  • 73RNA binding protein
  • 65broad histone mark
  • 63narrow histone mark
  • 60control
  • 32chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 244November, 2017
  • 58November, 2018
  • 29December, 2017
  • 25December, 2018
  • 14January, 2019
  • 7October, 2019
  • 3June, 2019
  • 2August, 2017
  • 2August, 2021
  • 2February, 2021
  • 1May, 2019
Available data
  • 384bam
  • 383bigWig
  • 379bed narrowPeak
  • 372fastq
  • 368bigBed narrowPeak
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 3tar
  • 2tagAlign
Organism
  • 387Homo sapiens
Biosample type
  • 345cell line
  • 31tissue
  • 9primary cell
  • 2in vitro differentiated cells
Organ
  • 320liver
  • 49blood
  • 49bodily fluid
  • 9kidney
  • 7epithelium
  • 4vasculature
  • 3blood vessel
  • 3brain
  • 2artery
  • 2heart
  • 1eye
Project
  • 387AMP
Genome assembly (visualization)
  • 379hg19
  • 344GRCh38
Lab
  • 385AMP-T2D consortium
  • 2Bing Ren, UCSD
Audit category:
  • 28inconsistent control
  • 9inconsistent ontology term
Audit category:
  • 11missing controlled_by
Audit category:
  • 15inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

387 results

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Clear Filters
ChIP-seq
cell line
HepG2287
GM1287849
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
RCC 7860 vector2
tissue
liver31
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac muscle cell1
choroid plexus epithelial cell1
in vitro differentiated cells
hepatocyte2
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