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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 393ChIP-seq
Assay category
  • 393DNA binding
Target of assay
  • 756histone modification
  • 755histone
  • 393broad histone mark
  • 361narrow histone mark
  • 266control
  • 94transcription factor
  • 32RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 1recombinant protein
Date released
  • 97August, 2017
  • 55May, 2021
  • 51May, 2019
  • 42November, 2017
  • 36April, 2019
  • 32October, 2019
  • 20May, 2024
  • 17September, 2018
  • 15October, 2018
  • 8February, 2018
  • 6November, 2019
  • 6October, 2017
  • 4January, 2019
  • 3December, 2017
  • 1August, 2021
Available data
  • 329bigWig
  • 326bed narrowPeak
  • 277bam
  • 193bigBed narrowPeak
  • 105tagAlign
  • 82fastq
  • 20bed broadPeak
Organism
  • 389Homo sapiens
Biosample type
  • 273tissue
  • 75primary cell
  • 38in vitro differentiated cells
  • 7cell line
Organ
  • 64pancreas
  • 63brain
  • 53heart
  • 40connective tissue
  • 32limb
  • 31blood vessel
  • 31vasculature
  • 25epithelium
  • 23liver
  • 20adipose tissue
  • 16nerve
  • 15musculature of body
  • 13artery
  • 13kidney
  • 4spleen
  • 3embryo
Project
  • 368AMP
  • 25T1D
Genome assembly (visualization)
  • 297GRCh38
  • 274hg19
Lab
  • 317AMP-T2D consortium
  • 55Kyle Gaulton, UCSD
  • 20Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
Audit category:
  • 6inconsistent ontology term
Audit category:
  • 24missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

393 results

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Clear Filters
ChIP-seq
tissue
left cardiac atrium20
subcutaneous abdominal adipose tissue20
liver19
tibial nerve16
heart left ventricle14
primary cell
monocyte25
CD8-positive, alpha-beta T cell20
pancreatic endocrine cell11
pancreatic ductal cell6
pancreatic acinar cell4
in vitro differentiated cells
adipocyte20
embryonic stem cell11
pancreatic endoderm3
definitive endodermal cell1
endocrine cell1
cell line
EndoC_BH16
HepG21
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