Experiment Matrix

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BIOSAMPLE

	ASSAY
3452 results Clear Filters	total RNA-seq	ChIP-seq	ATAC-seq	single cell RNA-seq	DNase-seq	RNA microarray	snATAC-seq	WGBS	Hi-C	pCHi-C	small RNA-seq	GRO-seq	Capture-C	HiChIP	RRBS	CRISPR RNA-seq	CRISPR genome editing followed by sgRNA sequencing	CRISPRi RNA-seq	FAIRE-seq	MPRA	...and 5 more
tissue
adipose tissue	382	2	1					3
islet of Langerhans	282	49	31				4		1	4									1
liver	164	103	20		1			3	1		1
kidney	49	26	75	64	11		2		1
bone element						84
heart left ventricle	3	34	2	18	2			4	1
left cardiac atrium		40		18	1
bone tissue	58
body of pancreas	2	28	4		4			2			2
coronary artery		4	36		2
tibial nerve	4	35	1		2
subcutaneous abdominal adipose tissue		36						3
heart right ventricle	1	13		17				2	1
heart	1	9			14			1
right cardiac atrium		6		18				1
skeletal muscle tissue		22	1												2
spleen		20	1		1			2
layer of hippocampus		22
pancreas	1	15			2		2	2
tibial artery		19	1		2
aorta	1	13		4				2	1
brain		9			12
muscle of leg		6			13			1
lung				9			10
omental fat pad	4	11	1		2						1
subcutaneous adipose tissue	4	12	1			1					1
ascending aorta	1	16			1
retina	2		15		1
muscle of arm					17
caudate nucleus		15			1
endocrine pancreas		16
right lobe of liver	2	8	1		2						2
substantia nigra		15
temporal lobe		15
cingulate gyrus		14
middle frontal area 46		14
pigmented layer of retina	2		12
right atrium auricular region	2	9	1		2
angular gyrus		13
germinal matrix		12
thoracic aorta	2	9	1
renal cortex interstitium					11
renal pelvis					10
right kidney					10
left kidney					8
white adipose tissue		8
aortic valve				4
cerebellum (Hemisphere)		3	1
gastrocnemius medialis									4
left renal cortex interstitium					4
left renal pelvis					4
psoas muscle	2								2
pulmonary valve				4
right renal pelvis					4
tricuspid valve				4
mitral valve				3
right renal cortex interstitium					3
superior frontal gyrus		3
anterior cingulate gyrus		2
cardiac atrium				2
cardiac ventricle				2
central medial thalamic nucleus		2
interventricular septum				2
middle temporal gyrus		2
pons		1			1
precuneus cortex		2
pulmonary artery				2
putamen		1			1
Ammon's horn					1
amygdala		1
bed nucleus of stria terminalis		1
brodmann area 43		1
claustrum of brain		1
distal epiphysis			1
distal epiphysis of femur			1
distal epiphysis of humerus			1
distal epiphysis of tibia			1
dorsal lateral geniculate nucleus		1
dorsal plus ventral thalamus		1
fastigial nucleus		1
forelimb muscle					1
frontal pole		1
gyrus rectus		1
head of caudate nucleus		1
hindlimb muscle					1
hippocampal gyrus		1
inferior parietal cortex					1
insular gyrus		1
kidney (Cortex-Medulla)
kidney interstitium						1
lateral hypothalamic area		1
lateral occipital gyrus		1
mammillary body		1
medial dorsal nucleus of thalamus		1
medial geniculate nucleus		1
medial globus pallidus		1
midbrain tectum		1
middle frontal gyrus		1
nucleus accumbens		1
occipital lobe					1
occipital pole		1
olivary body		1
orbital gyrus		1
paraterminal gyrus		1
piriform cortex		1
planum temporale		1
posterior cingulate cortex			1
posterior cingulate gyrus		1
primary motor cortex		1
primary somatosensory cortex		1
proximal epiphysis			1
proximal epiphysis of femur			1
proximal epiphysis of humerus			1
proximal epiphysis of tibia			1
pulvinar nucleus		1
renal glomerulus						1
secondary auditory cortex		1
subiculum		1
substantia nigra pars reticulata		1
subthalamic nucleus		1
superior parietal cortex		1
superior temporal gyrus					1
suprachiasmatic nucleus		1
supramarginal gyrus		1
temporal pole		1
transverse temporal gyrus		1
uncus of parahippocampal gyrus		1
white matter		1
primary cell
Langerhans cell				85			48
pancreatic alpha cell	52	13	35	1				25
monocyte	28	38	13
pancreatic beta cell	21	12	23	1				16
exocrine cell	39
CD8-positive, alpha-beta T cell	2	33
pancreatic acinar cell	4	8	9	4
pancreatic endocrine cell		23
pancreatic ductal cell	4	13	4	1
epithelial cell of proximal tubule		8
osteoblast	4		1		1
peripheral blood mononuclear cell							6
cardiac fibroblast		4
endothelial cell of umbilical vein		1			1				1
mesenchymal cell				3
pancreatic cell				2
pancreatic polypeptide-secreting cell				2
skeletal muscle cell		1			1
unclassified exocrine cell				2
Heart fetal (cardiac muscle cell)			1
Liver fetal (hepatocyte)			1
astrocyte of the cerebellum		1
brain microvascular endothelial cell		1
brain pericyte					1
cardiac muscle cell		1
choroid plexus epithelial cell		1
hepatic stellate cell					1
hepatocyte					1
immature natural killer cell	1
kidney capillary endothelial cell					1
kidney epithelial cell		1
kidney tubule cell					1
mast cell				1
natural killer cell	1
pancreatic delta cell				1
plasma cell	1
plasmacytoid dendritic cell	1
retinal pigment epithelial cell		1
in vitro differentiated cells
adipocyte	4	60
cardiomyocytes	47	3
embryonic stem cell	2	29	1
pancreatic endoderm	4	15										1
definitive endodermal cell	2	5										1
primitive gut cell	2	5										1
chondrocyte			5
endocrine cell	2	3
posterior foregut	2	3
Hepatic endoderm		4
Posterior foregut		2										1
pancreatic PP cell		3
immature adipocyte	1		1
Pancreatic progenitors (progenitor cell of endocrine pancreas)			1
white fat cell										1
cell line
EndoC_BH1	31	13	17						1				2	2			1
smooth muscle cell of the coronary artery	52	4	8
HepG2	9	43							1
GM12878		4	1
EndoC-BH1
Panc1		2
iPSC derived cell line		2
MIN6																				1
Synthesized DNA
early embryonic cell	1
stem cell
SB Ad3.1																1		1
hESC												1
mesendoderm										1
neural progenitor cell (neural stem cell)										1
trophoblast										1

Experiment Matrix

Assay

Assay category

Target of assay

Date released

Available data

Organism

Biosample type

Organ

Project

Genome assembly (visualization)

Lab

Audit category:

Audit category:

Audit category:

type!!!

3452 results