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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 405ChIP-seq
Assay category
  • 405DNA binding
Target of assay
  • 1017histone modification
  • 1016histone
  • 514narrow histone mark
  • 514transcription factor
  • 501broad histone mark
  • 343control
  • RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 210November, 2017
  • 43November, 2018
  • 39August, 2017
  • 38December, 2017
  • 28December, 2018
  • 11May, 2021
  • 10August, 2021
  • 8January, 2019
  • 7October, 2019
  • 5February, 2021
  • 4October, 2018
  • 2April, 2019
Available data
  • 395bigWig
  • 387bam
  • 370fastq
  • 369bed narrowPeak
  • 317bigBed narrowPeak
  • 40bed broadPeak
  • 40bigBed broadPeak
  • 17bed bed3+
  • 9tagAlign
  • 2tar
Organism
  • 405Homo sapiens
Biosample type
  • 301cell line
  • 66tissue
  • 38in vitro differentiated cells
Organ
  • 283liver
  • 43blood
  • 43bodily fluid
  • 30connective tissue
  • 12adipose tissue
  • 10pancreas
  • 7kidney
  • 6heart
  • 6spleen
  • 4artery
  • 4blood vessel
  • 4vasculature
  • 3embryo
  • 1epithelium
Project
  • 405AMP
Genome assembly (visualization)
  • 392hg19
  • 353GRCh38
Lab
  • 388AMP-T2D consortium
  • 10Bing Ren, UCSD
  • 7Kyle Gaulton, UCSD
Audit category:
  • 28inconsistent control
  • 10inconsistent ontology term
Audit category:
  • 32missing controlled_by
Audit category:
  • 19inconsistent control read length
  • 5inconsistent control run_type
target.investigated_as!
  • RNA binding protein
BIOSAMPLE
ASSAY

405 results

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Clear Filters
ChIP-seq
cell line
HepG2246
GM1287843
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
tissue
liver36
white adipose tissue12
spleen6
islet of Langerhans5
body of pancreas4
in vitro differentiated cells
adipocyte18
embryonic stem cell7
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
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