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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 478ChIP-seq
Assay category
  • 478DNA binding
Target of assay
  • 1017histone modification
  • 1016histone
  • 514narrow histone mark
  • 514transcription factor
  • 501broad histone mark
  • 343control
  • 114RNA binding protein
  • 89recombinant protein
  • chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 229November, 2017
  • 57November, 2018
  • 44August, 2017
  • 39December, 2017
  • 26December, 2018
  • 16May, 2021
  • 15October, 2018
  • 11August, 2021
  • 8January, 2019
  • 7October, 2019
  • 6April, 2019
  • 5February, 2021
  • 5May, 2019
  • 5May, 2024
  • 4June, 2019
  • 1November, 2019
Available data
  • 460bigWig
  • 449bam
  • 433bed narrowPeak
  • 418fastq
  • 371bigBed narrowPeak
  • 44bed broadPeak
  • 44bigBed broadPeak
  • 19bed bed3+
  • 9tagAlign
  • 3tar
Organism
  • 478Homo sapiens
Biosample type
  • 331cell line
  • 92tissue
  • 46in vitro differentiated cells
  • 9primary cell
Organ
  • 315liver
  • 41blood
  • 41bodily fluid
  • 38connective tissue
  • 19pancreas
  • 17adipose tissue
  • 17heart
  • 10kidney
  • 9vasculature
  • 8blood vessel
  • 8epithelium
  • 6spleen
  • 5artery
  • 3brain
  • 3embryo
  • 1eye
Project
  • 478AMP
Genome assembly (visualization)
  • 451hg19
  • 414GRCh38
Lab
  • 450AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 25inconsistent control
  • 14inconsistent ontology term
Audit category:
  • 29missing controlled_by
Audit category:
  • 12inconsistent control read length
target.investigated_as!
  • chromatin remodeller
BIOSAMPLE
ASSAY

478 results

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Clear Filters
ChIP-seq
cell line
HepG2277
GM1287841
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
tissue
liver35
white adipose tissue12
body of pancreas9
islet of Langerhans7
spleen6
in vitro differentiated cells
adipocyte20
embryonic stem cell12
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
primary cell
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac fibroblast1
cardiac muscle cell1
choroid plexus epithelial cell1
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