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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 425ChIP-seq
Assay category
  • 425DNA binding
Target of assay
  • 1017histone modification
  • 1016histone
  • 514narrow histone mark
  • 514transcription factor
  • 501broad histone mark
  • 343control
  • 114RNA binding protein
  • recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 178November, 2017
  • 48November, 2018
  • 47August, 2017
  • 42December, 2017
  • 28December, 2018
  • 16May, 2021
  • 15October, 2018
  • 14January, 2019
  • 11August, 2021
  • 6April, 2019
  • 5February, 2021
  • 5May, 2019
  • 5May, 2024
  • 4June, 2019
  • 1November, 2019
Available data
  • 408bigWig
  • 396bam
  • 381bed narrowPeak
  • 372fastq
  • 324bigBed narrowPeak
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 19bed bed3+
  • 9tagAlign
  • 3tar
Organism
  • 425Homo sapiens
Biosample type
  • 272cell line
  • 94tissue
  • 49in vitro differentiated cells
  • 10primary cell
Organ
  • 256liver
  • 51blood
  • 51bodily fluid
  • 40connective tissue
  • 19pancreas
  • 17adipose tissue
  • 17heart
  • 9epithelium
  • 9vasculature
  • 8blood vessel
  • 6spleen
  • 5artery
  • 3brain
  • 3embryo
  • 3kidney
  • 1eye
Project
  • 425AMP
Genome assembly (visualization)
  • 402hg19
  • 360GRCh38
Lab
  • 397AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 28inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 34missing controlled_by
Audit category:
  • 24inconsistent control read length
  • 8inconsistent control run_type
target.investigated_as!
  • recombinant protein
BIOSAMPLE
ASSAY

425 results

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Clear Filters
ChIP-seq
cell line
HepG2215
GM1287851
smooth muscle cell of the coronary artery4
EndoC_BH11
iPSC derived cell line1
tissue
liver37
white adipose tissue12
body of pancreas9
islet of Langerhans7
spleen6
in vitro differentiated cells
adipocyte22
embryonic stem cell12
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac fibroblast1
cardiac muscle cell1
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