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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
484
accessible chromatin
gene expression
372
target gene predictions
328
candidate regulatory elements
210
histone modifications
197
chromatin state
152
differential activity
binding sites
81
variant allelic effects
46
eQTL
11
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
487
September, 2022
333
November, 2021
263
February, 2021
188
May, 2021
110
September, 2023
99
February, 2024
86
May, 2020
56
January, 2021
53
June, 2020
42
March, 2023
40
May, 2022
37
January, 2022
23
January, 2020
19
April, 2020
17
August, 2021
9
November, 2022
8
October, 2022
7
October, 2019
6
August, 2017
4
February, 2023
2
May, 2024
2
November, 2020
1
June, 2021
1
March, 2020
Available data
1495
bed bed3+
401
bigWig
164
bed bed9
154
tsv
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1848
Homo sapiens
Biosample type
2506
tissue
1893
primary cell
1688
cell line
358
in vitro differentiated cells
4
stem cell
Organ
554
epithelium
231
connective tissue
123
vasculature
119
kidney
101
pancreas
94
skin of body
81
blood vessel
39
mammary gland
39
musculature of body
38
extraembryonic component
37
liver
37
penis
33
brain
32
lung
25
heart
23
intestine
21
embryo
21
eye
19
artery
18
vein
14
bronchus
14
lymphatic vessel
12
bone element
11
adrenal gland
11
bone marrow
11
stomach
10
esophagus
10
prostate gland
8
placenta
7
blood
7
bodily fluid
6
large intestine
4
gonad
4
mouth
4
small intestine
4
spinal cord
4
uterus
3
thyroid gland
3
trachea
2
ovary
1
limb
1
testis
1
thymus
Project
1370
AMP
333
ENCODE
110
KPMP
59
T1D
19
LungMap
2
community
Genome assembly (visualization)
1691
hg19
692
GRCh38
annotation_type!
binding sites
gene expression
BIOSAMPLE
TYPE
1893 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
histone modifications
chromatin state
differential activity
variant allelic effects
eQTL
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
18
2
86
4
2
1
1
common myeloid progenitor, CD34-positive
14
27
13
CD8-positive, alpha-beta T cell
4
5
7
30
1
B cell
6
10
14
8
CD4-positive, alpha-beta memory T cell
9
14
9
CD14-positive monocyte
19
8
4
endothelial cell
15
7
1
2
1
2
fibroblast
16
4
6
2
macrophage
12
3
3
7
1
CD8-positive, alpha-beta memory T cell
7
8
7
T cell
6
4
4
4
2
2
pericyte cell
10
10
1
1
regulatory T cell
5
4
5
1
3
2
foreskin keratinocyte
4
11
4
hepatocyte
8
3
1
4
1
2
mononuclear cell
6
7
6
natural killer cell
3
5
6
1
3
1
smooth muscle cell
9
6
2
1
1
endothelial cell of umbilical vein
2
4
6
5
1
trophoblast cell
1
5
7
1
4
T-helper 1 cell
3
3
6
3
1
astrocyte
8
4
2
1
1
keratinocyte
2
5
3
2
3
1
CD4-positive, alpha-beta T cell
1
3
8
3
neutrophil
3
4
2
2
2
1
1
pancreatic beta cell
8
3
3
1
pancreatic ductal cell
6
3
2
3
1
T-helper 17 cell
2
3
5
3
1
T-helper 2 cell
2
3
5
3
1
fibroblast of lung
4
6
4
pancreatic alpha cell
7
3
3
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
4
2
1
1
1
1
neurosphere
3
7
3
pancreatic acinar cell
6
3
3
1
pancreatic delta cell
5
4
3
1
skeletal muscle myoblast
2
2
4
1
3
1
excitatory neuron
12
fibroblast of cardiac tissue
2
4
3
3
foreskin fibroblast
1
2
6
2
1
mammary gland epithelial cell
1
4
3
3
1
osteoblast
5
2
2
2
1
fibroblast of dermis
4
4
3
skeletal muscle satellite cell
5
2
2
2
bronchial epithelial cell
1
2
4
1
2
dermis blood vessel endothelial cell
2
6
2
epithelial cell of prostate
3
4
2
erythroblast
5
2
2
kidney tubule cell
2
2
3
2
mammary epithelial cell
1
1
3
3
1
naive T cell
3
3
3
skin fibroblast
2
3
2
2
fibroblast of breast
2
4
2
glutamatergic neuron
6
2
hepatic stellate cell
3
1
1
1
1
1
mature neutrophil
1
7
myoepithelial cell of mammary gland
2
4
2
retinal pigment epithelial cell
3
1
2
1
1
glomerular endothelial cell
2
1
2
1
1
kidney glomerular epithelial cell
2
1
2
1
1
luminal epithelial cell of mammary gland
2
3
1
1
renal cortical epithelial cell
2
1
2
1
1
skeletal muscle fiber
5
2
type II pneumocyte
4
2
1
CD1c-positive myeloid dendritic cell
1
1
2
1
1
T-cell
2
4
astrocyte of the cerebellum
1
1
2
1
1
astrocyte of the hippocampus
1
1
2
1
1
cardiac muscle cell
1
1
2
2
choroid plexus epithelial cell
1
1
2
1
1
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
dermis lymphatic vessel endothelial cell
2
2
2
endothelial cell of hepatic sinusoid
6
enterocyte
3
3
epithelial cell of esophagus
1
2
1
2
epithelial cell of proximal tubule
1
1
2
1
1
fibroblast of mammary gland
1
1
2
1
1
fibroblast of pulmonary artery
1
1
2
1
1
fibroblast of villous mesenchyme
1
1
2
1
1
foreskin melanocyte
1
4
1
glomerular visceral epithelial cell
2
1
2
1
kidney epithelial cell
1
1
2
1
1
memory B cell
4
2
mesenchymal stem cell
2
1
1
1
1
naive thymus-derived CD8-positive, alpha-beta T cell
3
2
1
olfactory receptor cell
6
pancreatic stellate cell
2
1
3
pulmonary artery endothelial cell
1
1
2
1
1
skeletal muscle cell
1
1
2
1
1
smooth muscle cell of the brain vasculature
1
1
2
1
1
type I muscle cell
3
1
1
1
type II muscle cell
3
1
1
1
cardiac fibroblast
3
2
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
1
2
2
alternatively activated macrophage
1
4
basal cell
2
1
2
brain microvascular endothelial cell
1
1
2
1
fibroblast of peridontal ligament
1
1
2
1
fibroblast of the aortic adventitia
1
2
1
1
gabaergic neuron
3
2
inhibitory neuron
5
iris pigment epithelial cell
1
1
2
1
kidney capillary endothelial cell
1
1
1
1
1
lung microvascular endothelial cell
1
3
1
naive B cell
3
2
non-pigmented ciliary epithelial cell
1
1
2
1
peripheral blood mononuclear cell
4
1
activated CD4-positive, alpha-beta T cell
1
2
1
acute myeloid leukemia cell
2
2
astrocyte of the spinal cord
1
2
1
blood vessel smooth muscle cell
2
2
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
fibroblast of gingiva
1
2
1
fibroblast of the conjunctiva
1
2
1
inflammatory macrophage
1
3
mast cell
1
1
1
1
megakaryocyte
2
2
mesothelial cell
2
1
1
myofibroblast cell
1
3
pancreatic endothelial cell
1
3
pancreatic polypeptide-secreting cell
2
1
1
plasma cell
2
1
1
smooth muscle cell of the esophagus
2
2
stromal cell of bone marrow
1
2
1
type I pneumocyte
3
1
T follicular helper cell
2
1
activated CD8-positive, alpha-beta T cell
1
1
1
adipocyte
2
1
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
aortic endothelial cell
2
1
blood cell
3
bone marrow cell
2
1
brain pericyte
1
1
1
cardiac fibroblast
3
ciliated cell
2
1
club cell
2
1
endocardial cell
2
1
enteric neuron
2
1
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
goblet cell
1
2
mammary stem cell
1
1
1
microglial cell
1
1
1
naive t cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
pancreatic MUC5B+ductal cell
3
pancreatic alpha+beta cell
3
pancreatic cycling alpha cell
3
pancreatic gamma+epsilon cell
3
pancreatic macrophage cell
3
pancreatic mast cell
3
pancreatic quiescent stellate cell
3
parietal cell
1
1
1
peptic cell
1
1
1
plasmacytoid dendritic cell
2
1
preadipocyte
1
2
regular cardiac myocyte
1
1
1
schwann cell
2
1
thyroid follicular cell
1
1
1
tracheal epithelial cell
1
2
type B pancreatic cell
3
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Afferent / Efferent Arteriole Endothelial Cell
2
B Cell
2
B-lymphocyte
1
1
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
2
Connecting Tubule Principal Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
2
Cycling T Cell
2
Cytotoxic T Cell
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
2
Degenerative Vascular Smooth Muscle Cell
2
Descending Thin Limb Cell Type 1
2
Distal Convoluted Tubule Cell Type 1
2
Fibroblast
2
Glomerular Capillary Endothelial Cell
2
Intercalated Cell Type A
2
Intercalated Cell Type B
2
Ishikawa
1
1
Lymphatic Endothelial Cell
2
M2 Macrophage
2
Medullary Thick Ascending Limb Cell
2
Mesangial Cell
2
Monocyte
2
Monocyte-derived Cell
2
Muller cell
2
Myofibroblast
2
Natural Killer T Cell
2
Natural Killer T Cell Type 1
2
Natural Killer T Cell Type 2
2
Non-Classical Monocyte
2
Parietal Epithelial Cell
2
Peritubular Capillary Endothelial Cell
2
Plasma Cell
2
Plasmacytoid Dendritic Cell
2
Podocyte
2
Principal Cell
2
Proximal Tubule Epithelial Cell Segment 1 and 2
2
Proximal Tubule Epithelial Cell Segment 3
2
Regulatory T Cell
2
Renin-positive Juxtaglomerular Granular Cell
2
Schwann cell
2
T Cell
2
Th1 cell
1
1
Th17 cell
1
1
Transitional Principal-Intercalated Cell
2
Vascular Smooth Muscle Cell / Pericyte
2
alveolar macrophage
1
1
aortic adventitial fibroblast
1
1
articular chondrocyte
2
basal cell of epidermis
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
central memory CD8-positive, alpha-beta T cell
2
colon goblet cell
1
1
conventional dendritic cell
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
erythroid cell
1
1
extracellular matrix secreting cell
2
fat cell
1
1
fetal cardiomyocyte
2
foveolar cell of stomach
1
1
gamma-delta T cell
2
glial cell
2
granular cell of epidermis
1
1
intestinal tuft cell
1
1
leukocyte
2
luteal cell
1
1
mantle cell lymphoma cell
2
mature NK T cell
1
1
mature natural killer cell
2
melanocyte
1
1
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
myoepithelial cell
1
1
naive regulatory T cell
2
natural killer cell mediated cytotoxicity
1
1
neoplastic cell
1
1
neuron
2
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
pancreatic endocrine cell
1
1
paneth cell
1
1
peripheral blood stem cell
1
1
pre-B acute lymphoblastic leukemia cell
2
pulmonary interstitial fibroblast
1
1
regular atrial cardiac myocyte
1
1
renal epithelial cell
1
1
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small intestine goblet cell
1
1
smooth muscle cell of the coronary artery
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
uterine smooth muscle cell
1
1
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
Adipose stromal cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-negative hematopoietic stem cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Rhabdoid Tumor of the Kidney
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
Th2 cell
1
acute myeloid leukemia
1
adult endothelial progenitor cell
1
alveolar cell type II
1
amniotic epithelial cell
1
bone cell
1
bronchial goblet cell
1
cardiac muscle myoblast
1
cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
chronic lymphocytic leukemia cell
1
ciliated epithelial cell
1
columnar chondrocyte
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell of artery
1
enteroendocrine cell
1
erythrocyte
1
erythroid progenitor cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gastric goblet cell
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
head and neck squamous cell carcinoma
1
helper T cell
1
hepatoblast
1
immature natural killer cell
1
intestinal epithelial cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
leukemic stem cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
meso-epithelial cell
1
metanephros
1
microglial cell/astrocyte
1
mononuclear cell of bone marrow
1
mycosis fungoides
1
myeloid dendritic cell
1
myeloid leukocyte
1
myotube
1
naive B cel
1
neural cell
1
neural progenitor cell
1
neuroendocrine cell
1
neuronal stem cell
1
neutrophil progenitor cell
1
non-neuronal cell
1
pancreatic immune cell
1
parietal epithelial cell
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
primordial germ cell
1
progenitor cell
1
prostate gland cancer cell
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
renal proximal tubule cell
1
retinal bipolar neuron
1
seminoma cell
1
sensory neuron
1
small cell ovarian carcinoma cell
1
somatic gonadal cell
1
somatic muscle myotube
1
sperm
1
sympathetic neuron
1
trophoblast giant cell
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
ureteric bud
1
urinary bladder cancer cell
1
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