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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
484
accessible chromatin
478
gene expression
target gene predictions
candidate regulatory elements
210
histone modifications
197
chromatin state
152
differential activity
100
binding sites
81
variant allelic effects
44
eQTL
11
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
287
February, 2021
281
September, 2023
222
November, 2021
210
May, 2021
166
September, 2022
145
February, 2024
70
May, 2020
55
March, 2023
53
June, 2020
42
August, 2021
40
May, 2022
36
January, 2022
31
October, 2022
28
January, 2021
23
January, 2020
19
April, 2020
16
February, 2020
9
August, 2018
9
November, 2022
7
October, 2019
6
August, 2017
4
February, 2023
4
March, 2020
3
November, 2020
1
July, 2020
1
June, 2021
1
March, 2024
Available data
895
bed bed3+
589
tsv
407
bigWig
164
bed bed9
108
txt
27
bed bed9+
13
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1724
Homo sapiens
Biosample type
1769
primary cell
1626
cell line
1197
tissue
326
in vitro differentiated cells
1
stem cell
Organ
619
epithelium
284
kidney
182
connective tissue
119
vasculature
102
pancreas
81
blood vessel
57
liver
41
musculature of body
36
skin of body
22
artery
22
brain
22
mammary gland
18
extraembryonic component
17
heart
17
lung
15
intestine
14
eye
13
penis
10
embryo
10
lymphatic vessel
10
vein
9
bone element
9
bronchus
8
bone marrow
7
adrenal gland
7
placenta
7
stomach
5
blood
5
bodily fluid
5
esophagus
5
trachea
4
uterus
3
gonad
3
large intestine
3
prostate gland
2
small intestine
2
thyroid gland
1
adipose tissue
1
mouth
1
ovary
1
pericardium
1
spinal cord
1
testis
1
thymus
Project
1216
AMP
281
KPMP
222
ENCODE
31
T1D
19
LungMap
Genome assembly (visualization)
1103
hg19
590
GRCh38
annotation_type!
candidate regulatory elements
target gene predictions
BIOSAMPLE
TYPE
1769 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
gene expression
histone modifications
chromatin state
differential activity
binding sites
variant allelic effects
eQTL
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
18
15
86
1
4
2
1
1
CD8-positive, alpha-beta T cell
4
3
30
1
endothelial cell
15
9
1
2
2
1
2
hepatocyte
8
13
4
1
1
2
fibroblast
16
1
6
2
macrophage
12
2
3
7
1
epithelial cell of proximal tubule
1
16
1
1
1
regulatory T cell
5
7
1
3
1
2
glomerular endothelial cell
2
14
1
1
B cell
6
2
8
endothelial cell of hepatic sinusoid
6
4
6
pancreatic ductal cell
6
3
2
3
1
1
pancreatic beta cell
8
3
3
1
T cell
6
4
2
2
T-helper 1 cell
3
7
3
1
pancreatic alpha cell
7
3
3
1
smooth muscle cell
9
1
2
1
1
T-helper 17 cell
2
7
3
1
common myeloid progenitor, CD34-positive
13
osteoblast
5
2
2
1
3
pancreatic acinar cell
6
3
3
1
excitatory neuron
12
pancreatic delta cell
5
3
3
1
astrocyte
8
1
1
1
pericyte cell
10
1
endothelial cell of umbilical vein
2
5
2
1
natural killer cell
3
2
1
3
1
skeletal muscle myoblast
2
1
1
3
2
1
CD4-positive, alpha-beta memory T cell
9
T-helper 2 cell
2
3
3
1
erythroblast
5
2
2
keratinocyte
2
2
3
1
1
mammary epithelial cell
1
3
1
4
mature neutrophil
1
7
1
skeletal muscle fiber
5
2
2
skeletal muscle satellite cell
5
2
2
foreskin fibroblast
1
2
1
4
glomerular visceral epithelial cell
2
5
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
1
2
1
1
1
1
neutrophil
2
2
2
1
1
CD8-positive, alpha-beta memory T cell
7
hepatic stellate cell
3
1
1
1
1
kidney interstitial cell
1
6
kidney loop of Henle thin ascending limb epithelial cell
7
memory B cell
4
3
mesangial cell
2
5
mononuclear cell
6
1
naive thymus-derived CD8-positive, alpha-beta T cell
3
3
1
pancreatic stellate cell
2
2
3
retinal pigment epithelial cell
3
1
1
2
bronchial epithelial cell
1
1
2
2
enterocyte
3
3
fibroblast of lung
4
2
gamma-delta T cell
2
4
glutamatergic neuron
6
mammary gland epithelial cell
1
3
1
1
mesenchymal stem cell
2
1
1
1
1
trophoblast cell
1
1
4
type I muscle cell
3
1
1
1
type II muscle cell
3
1
1
1
cardiac fibroblast
3
2
Adaptive / Maladaptive / Repairing Fibroblast
3
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
2
Afferent / Efferent Arteriole Endothelial Cell
3
2
B Cell
3
2
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
3
2
Connecting Tubule Cell
3
2
Connecting Tubule Intercalated Cell Type A
3
2
Connecting Tubule Principal Cell
3
2
Cortical Thick Ascending Limb Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Cycling T Cell
3
2
Cytotoxic T Cell
3
2
Degenerative Connecting Tubule Cell
3
2
Degenerative Connecting Tubule Cell / Principal Cell
3
2
Degenerative Cortical Thick Ascending Limb Cell
3
2
Degenerative Distal Convoluted Tubule Cell
3
2
Degenerative Intercalated Cell Type A
3
2
Degenerative Peritubular Capillary Endothelial Cell
3
2
Degenerative Principal Cell
3
2
Degenerative Proximal Tubule Epithelial Cell
3
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
2
Degenerative Vascular Smooth Muscle Cell
3
2
Descending Thin Limb Cell Type 1
3
2
Distal Convoluted Tubule Cell Type 1
3
2
Fibroblast
3
2
Glomerular Capillary Endothelial Cell
3
2
Intercalated Cell Type A
3
2
Intercalated Cell Type B
3
2
Lymphatic Endothelial Cell
3
2
M2 Macrophage
3
2
Medullary Thick Ascending Limb Cell
3
2
Mesangial Cell
3
2
Monocyte
3
2
Monocyte-derived Cell
3
2
Myofibroblast
3
2
Natural Killer T Cell
3
2
Natural Killer T Cell Type 1
3
2
Natural Killer T Cell Type 2
3
2
Non-Classical Monocyte
3
2
Parietal Epithelial Cell
3
2
Peritubular Capillary Endothelial Cell
3
2
Plasma Cell
3
2
Plasmacytoid Dendritic Cell
3
2
Podocyte
3
2
Principal Cell
3
2
Proximal Tubule Epithelial Cell Segment 1 and 2
3
2
Proximal Tubule Epithelial Cell Segment 3
3
2
Regulatory T Cell
3
2
Renin-positive Juxtaglomerular Granular Cell
3
2
T Cell
3
2
T follicular helper cell
2
2
1
Transitional Principal-Intercalated Cell
3
2
Vascular Smooth Muscle Cell / Pericyte
3
2
alternatively activated macrophage
1
4
central memory CD8-positive, alpha-beta T cell
2
3
effector memory CD8-positive, alpha-beta T cell
2
3
fibroblast of cardiac tissue
2
3
fibroblast of mammary gland
1
1
1
2
fibroblast of pulmonary artery
1
1
1
2
fibroblast of villous mesenchyme
1
1
1
2
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
1
4
kidney glomerular epithelial cell
2
1
1
1
kidney loop of Henle thick ascending limb epithelial cell
5
kidney tubule cell
2
1
2
mast cell
1
1
1
1
1
myofibroblast cell
1
1
3
pancreatic endothelial cell
1
1
3
pancreatic polypeptide-secreting cell
2
2
1
plasma cell
2
1
1
1
renal cortical epithelial cell
2
1
1
1
tracheal epithelial cell
1
2
2
type II pneumocyte
4
1
CD14-positive monocyte
4
CD1c-positive myeloid dendritic cell
1
1
1
1
CD4-positive, alpha-beta T cell
1
3
acute myeloid leukemia cell
2
2
adipocyte
2
1
1
aortic adventitial fibroblast
1
1
2
aortic endothelial cell
2
1
1
basal cell
2
2
cardiac muscle cell
1
1
2
choroid plexus epithelial cell
1
1
1
1
cortical cell of adrenal gland
3
1
effector CD4-positive, alpha-beta T cell
2
2
effector T cell
2
2
fibroblast of dermis
3
1
foreskin keratinocyte
4
inflammatory macrophage
1
3
kidney connecting tubule epithelial cell
4
kidney epithelial cell
1
1
1
1
leukocyte
2
2
mature natural killer cell
2
2
memory T cell
2
2
memory regulatory T cell
2
2
naive B cell
3
1
nephron progenitor
4
pancreatic MUC5B+ductal cell
1
3
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic gamma+epsilon cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
preadipocyte
1
2
1
pulmonary artery endothelial cell
1
1
1
1
renal epithelial cell
1
1
2
skin fibroblast
2
2
vascular associated smooth muscle cell
2
2
CD4-positive helper T cell
1
2
Cycling Mononuclear Phagocyte
3
Ishikawa
1
1
1
Mast Cell
3
S-shaped body
3
Schwann cell
1
2
Th1 cell
1
1
1
Th17 cell
1
1
1
adult endothelial progenitor cell
3
astrocyte of the cerebellum
1
1
1
astrocyte of the hippocampus
1
1
1
blood cell
3
bone marrow cell
2
1
colon epithelial cell
3
endothelial cell of lymphatic vessel
3
epithelial cell of esophagus
1
2
erythroid cell
1
1
1
gabaergic neuron
3
glial cell
2
1
goblet cell
1
2
kidney capillary endothelial cell
1
1
1
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
luminal epithelial cell of mammary gland
2
1
meso-epithelial cell
1
1
1
mesothelial cell
2
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive B cel
2
1
naive T cell
3
naive regulatory T cell
2
1
neoplastic cell
1
1
1
neurosphere
3
pancreatic quiescent stellate cell
3
peripheral blood stem cell
1
1
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
skeletal muscle cell
1
1
1
smooth muscle cell of the brain vasculature
1
1
1
type I pneumocyte
3
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
Kupffer cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
1
1
Th2 cell
1
1
activated CD4-positive, alpha-beta T cell
1
1
activated CD8-positive, alpha-beta T cell
1
1
blood vessel smooth muscle cell
2
brain microvascular endothelial cell
1
1
brain pericyte
1
1
capillary endothelial cell
2
cardiac muscle myoblast
1
1
cholangiocyte
1
1
chronic lymphocytic leukemia cell
1
1
ciliated cell
2
club cell
2
columnar chondrocyte
1
1
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endocardial cell
2
endothelial cell of coronary artery
1
1
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of prostate
2
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of breast
2
fibroblast of peridontal ligament
1
1
fibroblast of the aortic adventitia
1
1
head and neck squamous cell carcinoma
1
1
iris pigment epithelial cell
1
1
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
1
1
mantle cell lymphoma cell
2
megakaryocyte
2
microglial cell
1
1
myeloid dendritic cell
1
1
myoepithelial cell of mammary gland
2
naive t cell
1
1
neural cell
1
1
neuron
2
neuronal stem cell
1
1
non-pigmented ciliary epithelial cell
1
1
oligodendrocyte
2
oligodendrocyte precursor cell
2
pancreatic endocrine cell
1
1
parietal cell
1
1
peptic cell
1
1
peripheral blood mononuclear cell
1
1
peripheral blood-derived erythroblast
2
plasmacytoid dendritic cell
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
renal principal cell
1
1
renal proximal tubule cell
1
1
renal vesicle
2
schwann cell
2
small cell ovarian carcinoma cell
1
1
smooth muscle cell of the coronary artery
1
1
smooth muscle cell of the esophagus
2
somatic muscle myotube
1
1
thyroid follicular cell
1
1
ureteric bud
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated pancreatic stellate cell
1
acute myeloid leukemia
1
alpha-beta T cell
1
alveolar cell type II
1
alveolar macrophage
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
aortic smooth muscle cell
1
astrocyte of the spinal cord
1
basal cell of epidermis
1
bone cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac endothelial cell
1
cardiac fibroblast
1
cardiac ventricle fibroblast
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
colorectal cancer
1
conventional dendritic cell
1
cytotoxic T cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dendritic cell
1
eccrine cell
1
effector CD8-positive, alpha-beta T cell
1
effector memory CD4-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of distal tubule
1
erythrocyte
1
erythroid lineage cell
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
fibroblast of gingiva
1
fibroblast of the conjunctiva
1
foreskin melanocyte
1
foveolar cell of stomach
1
gastric goblet cell
1
granular cell of epidermis
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
helper T cell
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
intestinal tuft cell
1
islet of Langerhans
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung microvascular endothelial cell
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary stem cell
1
mature B cell
1
mature NK T cell
1
mature eosinophil
1
melanocyte
1
meningioma cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
metanephros
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid leukocyte
1
myoepithelial cell
1
natural killer cell mediated cytotoxicity
1
neural progenitor cell
1
neuroendocrine cell
1
neutrophil progenitor cell
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
non-neuronal cell
1
pancreatic cell
1
pancreatic epsilon cell
1
pancreatic immune cell
1
paneth cell
1
parietal epithelial cell
1
pericardium fibroblast
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
progenitor cell
1
proximal tubule
1
proximal tubule cells with injury markers
1
quiescent pancreatic stellate cell
1
regular atrial cardiac myocyte
1
regular cardiac myocyte
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal intercalated cell
1
respiratory goblet cell
1
retinal bipolar neuron
1
seminoma cell
1
sensory neuron
1
skeletal muscle fibroblast
1
small intestine goblet cell
1
somatic gonadal cell
1
sperm
1
stellate neuron
1
stomach neuroendocrine cell
1
stromal cell
1
stromal cell of bone marrow
1
sympathetic neuron
1
trophoblast giant cell
1
type I cell of adrenal cortex
1
type II cell of adrenal cortex
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
1
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