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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
484
accessible chromatin
478
gene expression
372
target gene predictions
candidate regulatory elements
210
histone modifications
197
chromatin state
differential activity
100
binding sites
81
variant allelic effects
44
eQTL
11
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
333
November, 2021
327
September, 2022
289
February, 2021
256
May, 2021
171
September, 2023
151
February, 2024
86
May, 2020
56
January, 2021
53
June, 2020
42
August, 2021
40
May, 2022
37
January, 2022
31
October, 2022
23
January, 2020
19
April, 2020
16
February, 2020
13
March, 2023
9
August, 2018
9
November, 2022
7
October, 2019
6
August, 2017
5
March, 2020
4
February, 2023
3
November, 2020
1
July, 2020
1
June, 2021
1
March, 2024
Available data
1267
bed bed3+
437
tsv
410
bigWig
164
bed bed9
108
txt
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1944
Homo sapiens
Biosample type
2015
cell line
1989
primary cell
1710
tissue
391
in vitro differentiated cells
4
stem cell
Organ
644
epithelium
237
kidney
220
connective tissue
120
vasculature
96
pancreas
82
blood vessel
62
skin of body
58
liver
46
musculature of body
33
mammary gland
27
extraembryonic component
26
brain
25
heart
25
lung
23
artery
23
intestine
20
penis
17
eye
15
embryo
14
vein
12
bone element
12
bronchus
11
adrenal gland
11
bone marrow
11
lymphatic vessel
11
stomach
8
esophagus
8
placenta
6
large intestine
6
prostate gland
5
blood
5
bodily fluid
5
trachea
5
uterus
4
gonad
4
small intestine
3
thyroid gland
2
mouth
2
ovary
2
spinal cord
1
adipose tissue
1
limb
1
pericardium
1
testis
1
thymus
Project
1407
AMP
333
ENCODE
171
KPMP
59
T1D
19
LungMap
Genome assembly (visualization)
1475
hg19
707
GRCh38
annotation_type!
differential activity
candidate regulatory elements
BIOSAMPLE
TYPE
1989 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
gene expression
target gene predictions
histone modifications
chromatin state
binding sites
variant allelic effects
eQTL
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
18
15
2
86
1
4
2
1
1
CD8-positive, alpha-beta T cell
4
3
5
30
1
endothelial cell
15
9
7
1
2
2
1
2
hepatocyte
8
13
3
4
1
1
2
fibroblast
16
4
1
6
2
macrophage
12
2
3
3
7
1
common myeloid progenitor, CD34-positive
14
13
B cell
6
2
10
8
CD14-positive monocyte
19
4
regulatory T cell
5
7
4
1
3
1
2
epithelial cell of proximal tubule
1
16
1
1
1
1
pericyte cell
10
10
1
smooth muscle cell
9
1
6
2
1
1
glomerular endothelial cell
2
14
1
1
1
CD4-positive, alpha-beta memory T cell
9
9
T cell
6
4
4
2
2
T-helper 1 cell
3
7
3
3
1
T-helper 17 cell
2
7
3
3
1
endothelial cell of hepatic sinusoid
6
4
6
pancreatic ductal cell
6
3
3
2
1
1
astrocyte
8
1
4
1
1
natural killer cell
3
2
5
1
3
1
osteoblast
5
2
2
2
1
3
pancreatic beta cell
8
3
3
1
CD8-positive, alpha-beta memory T cell
7
7
endothelial cell of umbilical vein
2
4
5
2
1
keratinocyte
2
5
2
3
1
1
pancreatic alpha cell
7
3
3
1
mononuclear cell
6
6
1
pancreatic acinar cell
6
3
3
1
pancreatic delta cell
5
3
4
1
T-helper 2 cell
2
3
3
3
1
excitatory neuron
12
skeletal muscle myoblast
2
1
2
1
3
2
1
erythroblast
5
2
2
2
neutrophil
3
2
2
2
1
1
skeletal muscle satellite cell
5
2
2
2
trophoblast cell
1
5
1
4
fibroblast of lung
4
4
2
foreskin fibroblast
1
2
2
1
4
mammary epithelial cell
1
1
3
1
4
mammary gland epithelial cell
1
4
3
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
1
2
2
1
1
1
1
fibroblast of cardiac tissue
2
4
3
glomerular visceral epithelial cell
2
5
1
1
mature neutrophil
1
7
1
memory B cell
4
3
2
naive thymus-derived CD8-positive, alpha-beta T cell
3
3
2
1
skeletal muscle fiber
5
2
2
bronchial epithelial cell
1
2
1
2
2
fibroblast of dermis
4
3
1
foreskin keratinocyte
4
4
glutamatergic neuron
6
2
hepatic stellate cell
3
1
1
1
1
1
retinal pigment epithelial cell
3
1
1
1
2
CD4-positive, alpha-beta T cell
1
3
3
kidney interstitial cell
1
6
kidney loop of Henle thin ascending limb epithelial cell
7
kidney tubule cell
2
1
2
2
mesangial cell
2
5
skin fibroblast
2
3
2
type I muscle cell
3
1
1
1
1
type II muscle cell
3
1
1
1
1
type II pneumocyte
4
2
1
alternatively activated macrophage
1
1
4
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
enterocyte
3
3
fibroblast of mammary gland
1
1
1
1
2
fibroblast of pulmonary artery
1
1
1
1
2
fibroblast of villous mesenchyme
1
1
1
1
2
gamma-delta T cell
2
4
kidney glomerular epithelial cell
2
1
1
1
1
luminal epithelial cell of mammary gland
2
3
1
mast cell
1
1
1
1
1
1
mesenchymal stem cell
2
1
1
1
1
naive B cell
3
1
2
naive T cell
3
3
neurosphere
3
3
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
2
2
1
1
plasma cell
2
1
1
1
1
renal cortical epithelial cell
2
1
1
1
1
cardiac fibroblast
3
2
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
1
1
1
1
1
CD4-positive helper T cell
1
2
2
T follicular helper cell
2
2
1
basal cell
2
1
2
cardiac muscle cell
1
1
1
2
central memory CD8-positive, alpha-beta T cell
2
3
choroid plexus epithelial cell
1
1
1
1
1
effector memory CD8-positive, alpha-beta T cell
2
3
epithelial cell of prostate
3
2
gabaergic neuron
3
2
inflammatory macrophage
1
1
3
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
1
4
kidney epithelial cell
1
1
1
1
1
kidney loop of Henle thick ascending limb epithelial cell
5
myofibroblast cell
1
1
3
pancreatic stellate cell
2
2
1
pulmonary artery endothelial cell
1
1
1
1
1
tracheal epithelial cell
1
2
2
activated CD4-positive, alpha-beta T cell
1
2
1
acute myeloid leukemia cell
2
2
adipocyte
2
1
1
adult endothelial progenitor cell
3
1
aortic adventitial fibroblast
1
1
2
aortic endothelial cell
2
1
1
astrocyte of the cerebellum
1
1
1
1
astrocyte of the hippocampus
1
1
1
1
blood vessel smooth muscle cell
2
2
dermis blood vessel endothelial cell
2
2
dermis lymphatic vessel endothelial cell
2
2
effector CD4-positive, alpha-beta T cell
2
2
effector T cell
2
2
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
epithelial cell of esophagus
1
1
2
fibroblast of breast
2
2
kidney capillary endothelial cell
1
1
1
1
kidney connecting tubule epithelial cell
4
leukocyte
2
2
mature natural killer cell
2
2
megakaryocyte
2
2
memory T cell
2
2
memory regulatory T cell
2
2
mesothelial cell
2
1
1
myoepithelial cell of mammary gland
2
2
nephron progenitor
4
preadipocyte
1
2
1
renal epithelial cell
1
1
2
skeletal muscle cell
1
1
1
1
smooth muscle cell of the brain vasculature
1
1
1
1
smooth muscle cell of the esophagus
2
2
type I pneumocyte
3
1
vascular associated smooth muscle cell
2
2
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Ishikawa
1
1
1
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
Schwann cell
1
2
T Cell
3
Th1 cell
1
1
1
Th17 cell
1
1
1
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
activated CD8-positive, alpha-beta T cell
1
1
1
blood cell
3
bone marrow cell
2
1
brain microvascular endothelial cell
1
1
1
ciliated cell
2
1
club cell
2
1
endocardial cell
2
1
enteric neuron
2
1
erythroid cell
1
1
1
fibroblast of peridontal ligament
1
1
1
fibroblast of the aortic adventitia
1
1
1
glial cell
2
1
goblet cell
1
2
iris pigment epithelial cell
1
1
1
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
meso-epithelial cell
1
1
1
microglial cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive B cel
2
1
naive regulatory T cell
2
1
naive t cell
1
1
1
neoplastic cell
1
1
1
non-pigmented ciliary epithelial cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
parietal cell
1
1
1
peptic cell
1
1
1
peripheral blood stem cell
1
1
1
plasmacytoid dendritic cell
2
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
schwann cell
2
1
smooth muscle cell of the coronary artery
1
1
1
thyroid follicular cell
1
1
1
type B pancreatic cell
3
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
Kupffer cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
1
1
T-cell
2
Th2 cell
1
1
alveolar macrophage
1
1
amnion mesenchymal stem cell
1
1
amniotic stem cell
1
1
astrocyte of the spinal cord
1
1
basal cell of epidermis
1
1
brain pericyte
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
cardiac muscle myoblast
1
1
cholangiocyte
1
1
chronic lymphocytic leukemia cell
1
1
colon goblet cell
1
1
columnar chondrocyte
1
1
conventional dendritic cell
1
1
eccrine cell
1
1
endothelial cell of coronary artery
1
1
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
epidermal melanocyte
1
1
epithelial cell of amnion
1
1
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
fat cell
1
1
fetal cardiomyocyte
2
fibroblast of gingiva
1
1
fibroblast of the conjunctiva
1
1
foreskin melanocyte
1
1
foveolar cell of stomach
1
1
granular cell of epidermis
1
1
head and neck squamous cell carcinoma
1
1
intestinal tuft cell
1
1
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
1
1
lung microvascular endothelial cell
1
1
luteal cell
1
1
mammary stem cell
1
1
mantle cell lymphoma cell
2
mature NK T cell
1
1
melanocyte
1
1
myeloid dendritic cell
1
1
myoepithelial cell
1
1
natural killer cell mediated cytotoxicity
1
1
neural cell
1
1
neuron
2
neuronal stem cell
1
1
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
pancreatic endocrine cell
1
1
pancreatic endothelial cell
1
1
paneth cell
1
1
peripheral blood mononuclear cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular atrial cardiac myocyte
1
1
regular cardiac myocyte
1
1
renal principal cell
1
1
renal proximal tubule cell
1
1
renal vesicle
2
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small cell ovarian carcinoma cell
1
1
small intestine goblet cell
1
1
somatic muscle myotube
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
stromal cell of bone marrow
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
ureteric bud
1
1
uterine smooth muscle cell
1
1
ventricular cardiac muscle cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated pancreatic stellate cell
1
acute myeloid leukemia
1
alpha-beta T cell
1
alveolar cell type II
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac ventricle fibroblast
1
cell
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colorectal cancer
1
cytotoxic T cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
effector memory CD4-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
1
enteroendocrine cell
1
epithelial cell of distal tubule
1
erythrocyte
1
erythroid lineage cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of arm
1
gastric goblet cell
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
helper T cell
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
islet of Langerhans
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature B cell
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
metanephros
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid leukocyte
1
neural progenitor cell
1
neuroendocrine cell
1
neutrophil progenitor cell
1
non-neuronal cell
1
pancreatic MUC5B+ductal cell
1
pancreatic alpha+beta cell
1
pancreatic cell
1
pancreatic cycling alpha cell
1
pancreatic epsilon cell
1
pancreatic gamma+epsilon cell
1
pancreatic immune cell
1
pancreatic macrophage cell
1
pancreatic mast cell
1
parietal epithelial cell
1
pericardium fibroblast
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
progenitor cell
1
proximal tubule
1
proximal tubule cells with injury markers
1
quiescent pancreatic stellate cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal intercalated cell
1
retinal bipolar neuron
1
seminoma cell
1
sensory neuron
1
somatic gonadal cell
1
sperm
1
sympathetic neuron
1
trophoblast giant cell
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
1
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