Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
candidate regulatory elements
518
target gene predictions
511
chromatin state
197
accessible chromatin
115
eQTL
110
gene expression
89
histone modifications
74
Fine-mapped variants
48
variant allelic effects
36
binding sites
5
differential activity
4
variant to gene
3
pQTL
2
caQTL
2
sQTL
1
other
Date released
919
September, 2022
163
February, 2021
104
March, 2020
63
June, 2020
62
January, 2020
60
May, 2020
56
January, 2022
48
February, 2020
46
August, 2021
31
May, 2021
28
March, 2024
26
February, 2023
25
February, 2024
19
August, 2017
17
November, 2022
10
November, 2019
9
May, 2019
8
April, 2019
6
March, 2023
5
October, 2019
3
September, 2018
2
January, 2018
2
May, 2022
1
August, 2020
1
August, 2022
Available data
913
bed bed3+
486
bed bed9
212
tsv
120
bigWig
31
bigBed bed9
1
bam
Organism
1713
Homo sapiens
Biosample type
2141
primary cell
2025
cell line
1715
tissue
390
in vitro differentiated cells
4
stem cell
Organ
268
brain
172
kidney
171
musculature of body
150
heart
144
limb
129
intestine
94
pancreas
93
lung
76
connective tissue
75
large intestine
66
blood vessel
66
vasculature
65
adipose tissue
60
eye
57
stomach
55
extraembryonic component
50
epithelium
43
liver
43
small intestine
36
artery
34
adrenal gland
34
placenta
33
ureter
28
thymus
24
gonad
22
embryo
22
spinal cord
20
esophagus
19
nerve
19
spleen
18
bone element
15
skin of body
14
skeleton
13
ovary
12
thyroid gland
11
prostate gland
11
testis
10
lymphoid tissue
10
uterus
8
breast
7
mouth
7
urinary bladder
6
tongue
6
vagina
4
bodily fluid
3
blood
3
pituitary gland
2
mammary gland
2
penis
1
vein
Project
1710
AMP
5
ITG
Genome assembly (visualization)
1521
hg19
734
GRCh38
3
hg18
annotation_type!
representative DNase hypersensitivity sites
candidate regulatory elements
BIOSAMPLE
TYPE
1715 results
search-icon
table-tab-icon
Clear Filters
target gene predictions
chromatin state
accessible chromatin
eQTL
gene expression
histone modifications
Fine-mapped variants
variant allelic effects
binding sites
differential activity
variant to gene
pQTL
caQTL
sQTL
other
tissue
heart
20
21
5
3
1
2
1
kidney
14
16
10
1
7
2
1
1
stomach
21
19
3
1
1
1
brain
16
18
2
2
1
3
1
1
islet of Langerhans
1
3
6
13
11
1
2
1
2
2
2
liver
10
9
4
7
1
2
1
1
1
lung
17
16
1
1
adrenal gland
17
14
1
1
1
muscle of arm
16
16
1
1
placenta
15
14
1
1
2
1
retina
3
3
23
1
1
1
1
1
small intestine
17
15
1
1
muscle of leg
14
15
2
large intestine
14
13
1
1
thymus
14
11
1
1
1
left lung
13
13
muscle of back
13
13
adipose tissue
8
6
2
4
3
1
1
heart left ventricle
7
8
3
1
1
1
2
right lung
11
11
1
right kidney
10
10
1
1
renal pelvis
9
9
2
1
pigmented layer of retina
20
renal cortex interstitium
9
9
1
1
spleen
8
6
2
1
1
1
subcutaneous adipose tissue
1
2
6
5
3
1
1
tibial nerve
3
4
3
2
2
3
2
coronary artery
3
3
3
2
1
3
2
1
left kidney
9
9
caudate nucleus
3
4
2
2
1
1
3
1
pancreas
5
3
5
1
1
1
1
spinal cord
8
7
1
1
body of pancreas
5
4
1
2
3
1
right atrium auricular region
2
2
3
2
2
3
2
tibial artery
2
3
3
2
1
3
2
frontal cortex
2
2
2
2
2
3
1
cerebellum
2
2
1
2
2
1
3
heart right ventricle
5
5
1
1
1
omental fat pad
2
2
2
2
2
3
ovary
6
4
1
1
1
psoas muscle
8
4
1
putamen
1
1
2
3
1
1
3
1
sigmoid colon
7
5
1
substantia nigra
2
3
3
1
1
3
ascending aorta
2
3
1
1
1
3
1
testis
3
3
1
1
1
1
1
thyroid gland
5
4
1
1
transverse colon
5
4
1
1
Ammon's horn
2
1
2
1
1
3
gastrocnemius medialis
5
4
1
layer of hippocampus
3
4
1
1
1
left cardiac atrium
1
6
1
1
1
prostate gland
2
2
1
1
2
2
skeletal muscle tissue
3
3
2
1
1
aorta
4
4
1
muscle of trunk
5
4
temporal lobe
2
5
1
1
upper lobe of left lung
3
3
1
1
1
chorionic villus
4
4
endocrine pancreas
4
4
Peyer's patch
3
3
1
amygdala
2
1
1
3
chorion membrane
3
3
1
hypothalamus
2
1
1
3
midbrain
1
1
2
1
1
1
nucleus accumbens
2
1
1
3
occipital lobe
1
1
2
1
1
1
right lobe of liver
1
1
1
1
3
thoracic aorta
2
3
1
1
trophoblast
3
2
1
1
angular gyrus
2
4
anterior cingulate cortex
2
1
3
breast epithelium
3
2
1
cerebellum (Hemisphere)
1
1
3
1
colonic mucosa
2
3
1
esophagus
3
2
1
esophagus muscularis mucosa
2
2
1
1
globus pallidus
1
1
2
1
1
left renal cortex interstitium
2
2
1
1
left renal pelvis
2
2
1
1
right cardiac atrium
2
3
1
right renal cortex interstitium
2
2
1
1
right renal pelvis
2
2
1
1
superior temporal gyrus
1
1
2
1
1
uterus
2
1
1
1
1
vagina
2
2
1
1
C1 segment of cervical spinal cord
1
1
3
cartilage tissue
2
1
2
cingulate gyrus
2
3
duodenal mucosa
2
3
esophagus squamous epithelium
2
2
1
eye
2
2
1
gastrocnemius medialis(Muscle - Skeletal)
1
1
3
left ventricle myocardium
1
1
3
limb
2
2
1
medulla oblongata
1
1
2
1
mucosa of rectum
2
3
pons
1
1
2
1
skin of body
1
1
3
stomach smooth muscle
2
3
tongue
2
2
1
urinary bladder
2
2
1
Brodmann (1909) area 46
2
2
bone tissue
4
cortex of kidney
1
1
1
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
3
lower leg skin
2
2
middle frontal gyrus
1
1
1
1
muscle layer of colon
2
2
muscle layer of duodenum
2
2
parathyroid adenoma
2
2
umbilical cord
1
1
1
1
visceral abdominal adipose tissue
1
2
1
cerebellar cortex
1
1
1
dorsolateral prefrontal cortex
1
1
1
embryonic facial prominence
1
1
1
germinal matrix
1
2
inferior parietal cortex
1
1
1
prefrontal cortex
1
1
1
rectum smooth muscle tissue
1
2
hindlimb muscle
1
1
muscle of leg
2
amnion
1
1
arm bone
1
1
blood
2
breast carcinoma
1
1
endometrium cancer
1
1
fallopian tube
1
1
femur
1
1
first pancreatic bud
1
1
gastroesophageal sphincter
1
1
germinal center
1
1
kidney epithelium
1
1
leg bone
1
1
mammary gland
1
1
minor salivary gland
1
1
mucosa of stomach
1
1
pancreatic ductal cell
2
pancreatic stellate cell
2
pituitary gland
1
1
respiratory system smooth muscle
1
1
skeletal muscle
1
1
skin of forearm
1
1
skin of prepuce of penis
1
1
tissue
2
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
Schwann cell
1
abdominal aorta artery
1
anterior parahippocampal gyrus
1
aorta wall
1
aortic valve
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
beige adipocyte
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
caput epididymis
1
cardiac ventricle
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
circle of Willis
1
claustrum of brain
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
corneal epithelium
1
cortex
1
crypt of Lieberkuhn
1
dentate nucleus
1
diencephalon
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
dura mater
1
endometrium
1
endothelial cell
1
entorhinal cortex
1
epididymis
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
fetal heart
1
forelimb muscle
1
frontal pole
1
gastric (mucosa of stomach)
1
glomerular epithelium
1
gyrus rectus
1
intestinal epithelium
1
kidney - cortex
1
kidney - medulla
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulloblastoma
1
metanephros
1
mid-frontal lobe
1
mitral valve
1
morula
1
myelencephalon
1
nephron tubule
1
nucleus of ventral thalamus
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
1
paraventricular nucleus of hypothalamus
1
parietal lobe
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
precuneus cortex
1
prostate
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
pulmonary valve
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
renal connecting tubule
1
renal cortex tubule
1
renal glomerulus
1
septal nuclear complex
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
small intestine - terminal Ileum
1
smooth muscle tissue
1
subcutaneous abdominal adipose tissue
1
subiculum
1
superior parietal cortex
1
supramarginal gyrus
1
synovial joint
1
temporal pole
1
thalamic complex
1
thyroid
1
tissue-resident macrophage
1
tricuspid valve
1
type B pancreatic cell
1
white adipose tissue
1
white matter
1
whole blood
1
See all biosamples
Download