Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema
    • Citing CMDGA

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 1669candidate regulatory elements
  • 1183target gene predictions
  • 977histone modifications
  • 939chromatin state
  • 864accessible chromatin
  • 811binding sites
  • 579gene expression
  • 162differential activity
  • 162eQTL
  • 84variant allelic effects
  • Fine-mapped variants
  • 13caQTL
  • 5hQTL
  • 5sQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 3pQTL
  • 1representative DNase hypersensitivity sites
Date released
  • 2590February, 2021
  • 2511September, 2022
  • 389May, 2021
  • 333November, 2021
  • 289June, 2020
  • 286September, 2023
  • 155May, 2020
  • 128August, 2021
  • 106January, 2022
  • 101October, 2022
  • 89January, 2020
  • 68March, 2023
  • 64February, 2020
  • 56January, 2021
  • 56March, 2020
  • 49May, 2022
  • 44November, 2022
  • 35August, 2017
  • 32February, 2023
  • 19April, 2020
  • 14November, 2019
  • 14October, 2019
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 3November, 2020
  • 3September, 2018
  • 2January, 2018
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1June, 2021
Available data
  • 5554bed bed3+
  • 869bed bed9
  • 727tsv
  • 507bigWig
  • 108txt
  • 40bigBed bed9
  • 34bed bed9+
  • 4bam
  • 4bigBed narrowPeak
  • 3bed gappedPeak
  • 3xls
Organism
  • 7419Homo sapiens
Biosample type
  • 2524tissue
  • 2316primary cell
  • 2183cell line
  • 438in vitro differentiated cells
  • 4stem cell
Organ
  • 871epithelium
  • 649kidney
  • 434connective tissue
  • 428brain
  • 352musculature of body
  • 309lung
  • 280intestine
  • 247pancreas
  • 241heart
  • 239vasculature
  • 234limb
  • 201skin of body
  • 189bodily fluid
  • 179blood vessel
  • 178blood
  • 169large intestine
  • 164embryo
  • 146extraembryonic component
  • 124liver
  • 115stomach
  • 108eye
  • 89bone element
  • 86mammary gland
  • 84small intestine
  • 81adipose tissue
  • 76prostate gland
  • 73placenta
  • 71adrenal gland
  • 69artery
  • 64penis
  • 64ureter
  • 62lymph node
  • 49thymus
  • 48gonad
  • 41esophagus
  • 40spinal cord
  • 33spleen
  • 30uterus
  • 25testis
  • 22lymphoid tissue
  • 22nerve
  • 22ovary
  • 22vein
  • 21lymphatic vessel
  • 21thyroid gland
  • 18mouth
  • 18skeleton
  • 15bronchus
  • 13bone marrow
  • 12breast
  • 12pituitary gland
  • 9tongue
  • 9urinary bladder
  • 9vagina
  • 5trachea
  • 4nose
  • 1pericardium
Project
  • 6761AMP
  • 333ENCODE
  • 281KPMP
  • 59T1D
  • 19LungMap
  • 9community
  • 5ITG
Genome assembly (visualization)
  • 6585hg19
  • 1583GRCh38
  • 4hg18
annotation_type!
  • Fine-mapped variants
BIOSAMPLE
TYPE

7467 results

search-icontable-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
chromatin state
accessible chromatin
binding sites
gene expression
differential activity
eQTL
variant allelic effects
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
tissue
heart37201215132
stomach402111931
kidney2914216101711
brain291631821121
lung3317161
primary cell
monocyte286181154211
common myeloid progenitor, CD34-positive271413
CD8-positive, alpha-beta T cell7530143
B cell1310862
endothelial cell7114282
cell line
A549211911812
MCF-7962513
K562771712
EndoC_BH11181831
breast cancer cell119
in vitro differentiated cells
neural progenitor cell55154107
hematopoietic multipotent progenitor cell1910110111
adipocyte4616311
embryonic stem cell11561
cardiomyocytes11
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2023 Regents of the University of California.

  • UC San Diego