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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1671
candidate regulatory elements
1357
target gene predictions
977
histone modifications
chromatin state
913
accessible chromatin
817
binding sites
gene expression
169
eQTL
167
differential activity
140
variant allelic effects
Fine-mapped variants
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Date released
2413
February, 2021
1678
September, 2022
333
November, 2021
299
February, 2024
294
May, 2021
289
June, 2020
152
May, 2020
115
September, 2023
106
January, 2022
101
October, 2022
79
August, 2021
66
January, 2020
56
January, 2021
55
March, 2023
45
March, 2020
44
November, 2022
32
February, 2023
26
February, 2020
19
April, 2020
15
May, 2022
13
November, 2019
9
October, 2019
3
September, 2018
2
November, 2020
1
August, 2020
1
August, 2022
1
June, 2021
Available data
5883
bed bed3+
535
bigWig
186
tsv
16
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
Organism
6200
Homo sapiens
Biosample type
2140
cell line
1957
tissue
1794
primary cell
352
in vitro differentiated cells
3
stem cell
Organ
643
epithelium
373
kidney
355
connective tissue
339
brain
284
musculature of body
239
lung
227
intestine
207
pancreas
190
bodily fluid
188
vasculature
181
blood
180
limb
177
embryo
174
heart
167
skin of body
142
blood vessel
136
large intestine
113
extraembryonic component
112
liver
99
eye
93
stomach
77
uterus
72
mammary gland
70
bone element
64
prostate gland
64
small intestine
60
adipose tissue
58
adrenal gland
57
placenta
54
lymph node
54
penis
53
artery
51
ureter
40
gonad
38
thymus
36
esophagus
31
spinal cord
27
spleen
21
testis
18
lymphoid tissue
18
ovary
18
thyroid gland
17
vein
16
lymphatic vessel
16
nerve
15
skeleton
14
bronchus
14
mouth
12
pituitary gland
11
bone marrow
10
breast
7
tongue
7
urinary bladder
7
vagina
5
trachea
3
nose
Project
5712
AMP
333
ENCODE
110
KPMP
60
T1D
19
LungMap
9
community
5
ITG
Genome assembly (visualization)
5936
hg19
921
GRCh38
4
hg18
annotation_type!
Fine-mapped variants
gene expression
chromatin state
BIOSAMPLE
TYPE
6248 results
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Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
eQTL
differential activity
variant allelic effects
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
cell line
HeLa-S3
5
55
1
A549
21
19
1
1
2
H1-hESC
1
39
1
1
2
K562
7
23
1
1
2
MCF-7
9
6
2
1
3
+ See 760 more…
tissue
heart
37
20
1
5
1
2
stomach
40
21
1
3
1
kidney
29
14
2
10
1
1
1
brain
29
16
3
2
1
2
1
lung
33
17
1
+ See 234 more…
primary cell
monocyte
2
86
18
1
4
2
1
1
CD8-positive, alpha-beta T cell
7
5
30
4
common myeloid progenitor, CD34-positive
27
14
B cell
14
10
6
endothelial cell
7
1
15
2
1
2
2
+ See 396 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
adipocyte
4
6
1
4
1
embryonic stem cell
1
1
6
1
mesenchymal stem cell
3
3
1
1
1
+ See 106 more…
stem cell
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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