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Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
481
accessible chromatin
478
gene expression
372
target gene predictions
328
candidate regulatory elements
210
histone modifications
152
differential activity
binding sites
81
variant allelic effects
46
eQTL
33
chromatin state
11
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
385
February, 2021
333
November, 2021
324
September, 2022
281
September, 2023
256
May, 2021
146
February, 2024
86
May, 2020
56
January, 2021
55
March, 2023
53
June, 2020
42
August, 2021
40
May, 2022
37
January, 2022
21
January, 2020
19
April, 2020
16
February, 2020
9
August, 2018
9
November, 2022
8
October, 2022
6
August, 2017
5
March, 2020
5
October, 2019
4
February, 2023
3
November, 2020
2
May, 2024
1
July, 2020
1
June, 2021
1
March, 2024
Available data
1495
bed bed3+
591
tsv
410
bigWig
bed bed9
108
txt
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
xls
Organism
2159
Homo sapiens
Biosample type
2204
primary cell
2130
tissue
1530
cell line
392
in vitro differentiated cells
4
stem cell
Organ
742
epithelium
299
kidney
236
connective tissue
137
vasculature
122
pancreas
89
blood vessel
77
skin of body
54
liver
42
musculature of body
32
mammary gland
31
penis
30
extraembryonic component
29
brain
28
lung
26
heart
23
intestine
22
artery
18
eye
17
embryo
15
lymphatic vessel
14
vein
12
bronchus
11
adrenal gland
11
bone element
11
stomach
10
bone marrow
9
esophagus
8
prostate gland
7
blood
7
bodily fluid
7
placenta
6
large intestine
4
gonad
4
small intestine
4
uterus
3
mouth
3
spinal cord
3
thyroid gland
3
trachea
2
ovary
1
adipose tissue
1
limb
1
pericardium
1
testis
1
thymus
Project
1510
AMP
333
ENCODE
281
KPMP
59
T1D
19
LungMap
2
community
Genome assembly (visualization)
1536
hg19
537
GRCh38
annotation_type!
binding sites
files.file_type!
bed bed9
xls
BIOSAMPLE
TYPE
2204 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
gene expression
target gene predictions
candidate regulatory elements
histone modifications
differential activity
variant allelic effects
eQTL
chromatin state
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
18
15
2
86
4
2
1
1
CD8-positive, alpha-beta T cell
4
3
5
7
30
1
common myeloid progenitor, CD34-positive
14
27
endothelial cell
15
9
7
1
2
1
2
B cell
6
2
10
14
hepatocyte
8
13
3
1
4
2
fibroblast
16
4
6
2
macrophage
12
2
3
3
7
1
CD14-positive monocyte
19
8
regulatory T cell
5
7
4
5
1
2
CD4-positive, alpha-beta memory T cell
9
14
epithelial cell of proximal tubule
1
16
1
2
1
pericyte cell
10
10
1
T-helper 1 cell
3
7
3
6
1
glomerular endothelial cell
2
14
1
2
1
smooth muscle cell
9
1
6
2
1
1
T cell
6
4
4
2
2
T-helper 17 cell
2
7
3
5
1
natural killer cell
3
2
5
6
1
1
pancreatic ductal cell
6
3
3
2
3
1
pancreatic beta cell
7
3
3
3
1
astrocyte
8
1
4
2
1
pancreatic acinar cell
6
3
3
3
1
pancreatic alpha cell
6
3
3
3
1
CD4-positive, alpha-beta T cell
1
3
8
3
CD8-positive, alpha-beta memory T cell
7
8
foreskin keratinocyte
4
11
pancreatic delta cell
4
3
4
3
1
T-helper 2 cell
2
3
3
5
1
endothelial cell of umbilical vein
2
4
6
1
1
keratinocyte
2
5
3
2
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
1
2
4
2
1
1
1
1
trophoblast cell
1
5
7
1
mononuclear cell
6
7
neutrophil
3
4
2
2
1
1
osteoblast
5
2
2
2
2
excitatory neuron
12
skeletal muscle myoblast
2
1
2
4
1
1
1
fibroblast of lung
4
6
1
foreskin fibroblast
1
2
6
2
skeletal muscle satellite cell
5
2
2
2
endothelial cell of hepatic sinusoid
6
4
glomerular visceral epithelial cell
2
5
1
2
neurosphere
3
7
erythroblast
5
2
2
fibroblast of cardiac tissue
2
4
3
mammary epithelial cell
1
1
3
3
1
mammary gland epithelial cell
1
4
3
1
memory B cell
4
3
2
naive thymus-derived CD8-positive, alpha-beta T cell
3
3
2
1
skeletal muscle fiber
5
2
2
bronchial epithelial cell
1
2
4
1
dermis blood vessel endothelial cell
2
6
fibroblast of dermis
4
4
glutamatergic neuron
6
2
hepatic stellate cell
3
1
1
1
1
1
kidney tubule cell
2
1
2
3
mature neutrophil
1
7
pancreatic stellate cell
2
2
1
3
epithelial cell of prostate
3
4
kidney glomerular epithelial cell
2
1
1
2
1
kidney interstitial cell
1
6
kidney loop of Henle thin ascending limb epithelial cell
7
mesangial cell
2
5
renal cortical epithelial cell
2
1
1
2
1
retinal pigment epithelial cell
3
1
2
1
skin fibroblast
2
3
2
type I muscle cell
3
1
1
1
1
type II muscle cell
3
1
1
1
1
type II pneumocyte
4
2
1
T-cell
2
4
alternatively activated macrophage
1
1
4
cardiac muscle cell
1
1
2
2
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
enterocyte
3
3
fibroblast of breast
2
4
gamma-delta T cell
2
4
kidney epithelial cell
1
1
1
2
1
luminal epithelial cell of mammary gland
2
3
1
mesenchymal stem cell
2
1
1
1
1
myoepithelial cell of mammary gland
2
4
naive B cell
3
1
2
naive T cell
3
3
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
2
2
1
1
cardiac fibroblast
3
2
Adaptive / Maladaptive / Repairing Fibroblast
3
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
2
Afferent / Efferent Arteriole Endothelial Cell
3
2
B Cell
3
2
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
1
1
2
1
CD4-positive helper T cell
1
2
2
Classical Dendritic Cell
3
2
Connecting Tubule Cell
3
2
Connecting Tubule Intercalated Cell Type A
3
2
Connecting Tubule Principal Cell
3
2
Cortical Thick Ascending Limb Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Cycling T Cell
3
2
Cytotoxic T Cell
3
2
Degenerative Connecting Tubule Cell
3
2
Degenerative Connecting Tubule Cell / Principal Cell
3
2
Degenerative Cortical Thick Ascending Limb Cell
3
2
Degenerative Distal Convoluted Tubule Cell
3
2
Degenerative Intercalated Cell Type A
3
2
Degenerative Peritubular Capillary Endothelial Cell
3
2
Degenerative Principal Cell
3
2
Degenerative Proximal Tubule Epithelial Cell
3
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
2
Degenerative Vascular Smooth Muscle Cell
3
2
Descending Thin Limb Cell Type 1
3
2
Distal Convoluted Tubule Cell Type 1
3
2
Fibroblast
3
2
Glomerular Capillary Endothelial Cell
3
2
Intercalated Cell Type A
3
2
Intercalated Cell Type B
3
2
Lymphatic Endothelial Cell
3
2
M2 Macrophage
3
2
Medullary Thick Ascending Limb Cell
3
2
Mesangial Cell
3
2
Monocyte
3
2
Monocyte-derived Cell
3
2
Myofibroblast
3
2
Natural Killer T Cell
3
2
Natural Killer T Cell Type 1
3
2
Natural Killer T Cell Type 2
3
2
Non-Classical Monocyte
3
2
Parietal Epithelial Cell
3
2
Peritubular Capillary Endothelial Cell
3
2
Plasma Cell
3
2
Plasmacytoid Dendritic Cell
3
2
Podocyte
3
2
Principal Cell
3
2
Proximal Tubule Epithelial Cell Segment 1 and 2
3
2
Proximal Tubule Epithelial Cell Segment 3
3
2
Regulatory T Cell
3
2
Renin-positive Juxtaglomerular Granular Cell
3
2
T Cell
3
2
T follicular helper cell
2
2
1
Transitional Principal-Intercalated Cell
3
2
Vascular Smooth Muscle Cell / Pericyte
3
2
astrocyte of the cerebellum
1
1
2
1
astrocyte of the hippocampus
1
1
2
1
basal cell
2
1
2
central memory CD8-positive, alpha-beta T cell
2
3
choroid plexus epithelial cell
1
1
2
1
effector memory CD8-positive, alpha-beta T cell
2
3
epithelial cell of esophagus
1
2
2
fibroblast of mammary gland
1
1
2
1
fibroblast of pulmonary artery
1
1
2
1
fibroblast of villous mesenchyme
1
1
2
1
foreskin melanocyte
1
4
gabaergic neuron
3
2
inflammatory macrophage
1
1
3
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
1
4
kidney loop of Henle thick ascending limb epithelial cell
5
mast cell
1
1
1
1
1
pancreatic endothelial cell
1
1
3
peripheral blood mononuclear cell
4
1
plasma cell
2
1
1
1
pulmonary artery endothelial cell
1
1
2
1
skeletal muscle cell
1
1
2
1
smooth muscle cell of the brain vasculature
1
1
2
1
activated CD4-positive, alpha-beta T cell
1
2
1
acute myeloid leukemia cell
2
2
adipocyte
2
1
1
adult endothelial progenitor cell
3
1
blood vessel smooth muscle cell
2
2
brain microvascular endothelial cell
1
1
2
dermis lymphatic vessel endothelial cell
2
2
effector CD4-positive, alpha-beta T cell
2
2
effector T cell
2
2
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
fibroblast of peridontal ligament
1
1
2
fibroblast of the aortic adventitia
1
2
1
iris pigment epithelial cell
1
1
2
kidney capillary endothelial cell
1
1
1
1
kidney connecting tubule epithelial cell
4
leukocyte
2
2
lung microvascular endothelial cell
1
3
mature natural killer cell
2
2
megakaryocyte
2
2
memory T cell
2
2
memory regulatory T cell
2
2
mesothelial cell
2
1
1
myofibroblast cell
1
3
nephron progenitor
4
non-pigmented ciliary epithelial cell
1
1
2
pancreatic MUC5B+ductal cell
1
3
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic gamma+epsilon cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
smooth muscle cell of the esophagus
2
2
type I pneumocyte
3
1
vascular associated smooth muscle cell
2
2
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
Schwann cell
1
2
activated CD8-positive, alpha-beta T cell
1
1
1
aortic endothelial cell
2
1
astrocyte of the spinal cord
1
2
blood cell
3
bone marrow cell
2
1
brain pericyte
1
1
1
cardiac fibroblast
3
ciliated cell
2
1
club cell
2
1
endocardial cell
2
1
enteric neuron
2
1
fibroblast of gingiva
1
2
fibroblast of the conjunctiva
1
2
glial cell
2
1
goblet cell
1
2
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
microglial cell
1
1
1
naive B cel
2
1
naive regulatory T cell
2
1
naive t cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
pancreatic quiescent stellate cell
3
parietal cell
1
1
1
peptic cell
1
1
1
plasmacytoid dendritic cell
2
1
preadipocyte
1
2
schwann cell
2
1
smooth muscle cell of the coronary artery
1
1
1
stromal cell of bone marrow
1
2
thyroid follicular cell
1
1
1
tracheal epithelial cell
1
2
type B pancreatic cell
3
B-lymphocyte
1
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
1
Ishikawa
1
1
Kupffer cell
2
Muller cell
2
Th1 cell
1
1
Th17 cell
1
1
alveolar macrophage
1
1
amnion mesenchymal stem cell
1
1
amniotic stem cell
1
1
aortic adventitial fibroblast
1
1
articular chondrocyte
2
basal cell of epidermis
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
cholangiocyte
1
1
colon goblet cell
1
1
conventional dendritic cell
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
effector memory CD4-positive, alpha-beta T cell
1
1
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
epidermal melanocyte
1
1
epithelial cell of amnion
1
1
erythroid cell
1
1
extracellular matrix secreting cell
2
fat cell
1
1
fetal cardiomyocyte
2
foveolar cell of stomach
1
1
granular cell of epidermis
1
1
intestinal tuft cell
1
1
kidney inner medulla collecting duct intercalated cell
2
luteal cell
1
1
mammary stem cell
1
1
mantle cell lymphoma cell
2
mature NK T cell
1
1
melanocyte
1
1
meso-epithelial cell
1
1
myeloid dendritic cell
1
1
myoepithelial cell
1
1
natural killer cell mediated cytotoxicity
1
1
neoplastic cell
1
1
neural cell
1
1
neuron
2
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
pancreatic endocrine cell
1
1
paneth cell
1
1
peripheral blood stem cell
1
1
pre-B acute lymphoblastic leukemia cell
2
pulmonary interstitial fibroblast
1
1
regular atrial cardiac myocyte
1
1
regular cardiac myocyte
1
1
renal epithelial cell
1
1
renal principal cell
1
1
renal vesicle
2
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small intestine goblet cell
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
ureteric bud
1
1
uterine smooth muscle cell
1
1
ventricular cardiac muscle cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
Adipose stromal cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-negative hematopoietic stem cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Rhabdoid Tumor of the Kidney
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
Th2 cell
1
activated pancreatic stellate cell
1
acute myeloid leukemia
1
alpha-beta T cell
1
alveolar cell type II
1
amniotic epithelial cell
1
bone cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac muscle myoblast
1
cardiac ventricle fibroblast
1
cell
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
chromaffin cell of adrenal gland
1
chronic lymphocytic leukemia cell
1
ciliated epithelial cell
1
columnar chondrocyte
1
cytotoxic T cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
1
endothelial cell of coronary artery
1
enteroendocrine cell
1
epithelial cell of distal tubule
1
erythrocyte
1
erythroid lineage cell
1
erythroid progenitor cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gastric goblet cell
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
head and neck squamous cell carcinoma
1
helper T cell
1
hepatoblast
1
immature natural killer cell
1
intestinal epithelial cell
1
islet of Langerhans
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
leukemic stem cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature B cell
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
metanephros
1
microglial cell/astrocyte
1
mononuclear cell of bone marrow
1
mycosis fungoides
1
myeloid leukocyte
1
myotube
1
neural progenitor cell
1
neuroendocrine cell
1
neuronal stem cell
1
neutrophil progenitor cell
1
non-neuronal cell
1
pancreatic cell
1
pancreatic epsilon cell
1
pancreatic immune cell
1
parietal epithelial cell
1
pericardium fibroblast
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
primordial germ cell
1
progenitor cell
1
prostate gland cancer cell
1
proximal tubule
1
proximal tubule cells with injury markers
1
quiescent pancreatic stellate cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal intercalated cell
1
renal proximal tubule cell
1
retinal bipolar neuron
1
seminoma cell
1
sensory neuron
1
small cell ovarian carcinoma cell
1
somatic gonadal cell
1
somatic muscle myotube
1
sperm
1
sympathetic neuron
1
trophoblast giant cell
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
1
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