Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
109
accessible chromatin
102
candidate regulatory elements
98
target gene predictions
72
gene expression
64
chromatin state
binding sites
37
histone modifications
27
eQTL
19
variant allelic effects
18
differential activity
9
Fine-mapped variants
3
caQTL
2
pQTL
Date released
163
September, 2022
107
February, 2021
54
November, 2021
41
February, 2024
24
June, 2020
20
August, 2021
19
March, 2020
19
May, 2021
17
September, 2023
12
January, 2020
12
May, 2020
11
February, 2020
11
March, 2023
10
August, 2017
7
January, 2022
7
November, 2022
5
May, 2022
3
April, 2020
3
November, 2020
3
September, 2018
2
January, 2021
2
October, 2019
1
August, 2018
1
February, 2023
1
January, 2018
1
July, 2020
1
June, 2021
1
November, 2019
1
October, 2022
Available data
380
bed bed3+
90
tsv
76
bigWig
54
bed bed9
7
txt
3
bigBed bed9
3
csv
1
bam
1
bigBed narrowPeak
Organism
560
Homo sapiens
Biosample type
307
primary cell
151
tissue
54
in vitro differentiated cells
47
cell line
1
stem cell
Organ
906
epithelium
645
kidney
450
brain
427
connective tissue
368
musculature of body
302
lung
283
intestine
272
pancreas
250
heart
245
vasculature
242
limb
202
embryo
188
blood vessel
186
skin of body
172
bodily fluid
168
large intestine
162
blood
143
extraembryonic component
143
liver
119
stomach
103
eye
87
adipose tissue
84
small intestine
81
bone element
79
uterus
75
mammary gland
73
adrenal gland
70
placenta
70
prostate gland
69
artery
64
ureter
57
penis
50
lymph node
48
thymus
47
gonad
45
esophagus
41
spinal cord
33
spleen
25
nerve
24
lymphoid tissue
23
ovary
23
testis
23
thyroid gland
20
vein
19
lymphatic vessel
19
mouth
18
skeleton
14
bronchus
13
breast
13
pituitary gland
11
bone marrow
10
tongue
10
urinary bladder
10
vagina
4
nose
3
trachea
1
pericardium
Project
482
AMP
54
ENCODE
15
KPMP
4
ITG
3
LungMap
2
T1D
Genome assembly (visualization)
460
hg19
173
GRCh38
3
hg18
annotation_type!
binding sites
BIOSAMPLE
TYPE
560 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
candidate regulatory elements
target gene predictions
gene expression
chromatin state
histone modifications
eQTL
variant allelic effects
differential activity
Fine-mapped variants
caQTL
pQTL
primary cell
hepatocyte
8
1
3
13
1
4
2
fibroblast
16
4
2
6
pericyte cell
10
1
10
1
fibroblast of lung
6
4
4
osteoblast
5
2
2
2
1
2
+ See 47 more…
tissue
liver
4
13
10
1
9
2
7
1
1
adipose tissue
2
7
8
3
6
4
1
subcutaneous adipose tissue
2
2
5
1
6
1
1
3
omental fat pad
2
5
2
2
2
2
3
right lobe of liver
2
1
1
1
1
3
+ See 8 more…
in vitro differentiated cells
adipocyte
4
4
6
1
6
1
mesenchymal stem cell
1
3
3
2
1
chondrocyte
5
hepatocyte
2
1
1
hepatocyte(AFP)
3
+ See 10 more…
cell line
HepG2
2
2
3
2
5
GM23248
1
2
1
1
1
HuH-7
1
1
1
1
1
HT1080
2
1
1
fibroblast of cardiac tissue
2
2
+ See 10 more…
stem cell
mesenchymal stem cell
1
See all biosamples
Download