Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
264
gene expression
226
accessible chromatin
215
target gene predictions
173
candidate regulatory elements
92
differential activity
89
chromatin state
binding sites
41
variant allelic effects
39
histone modifications
5
eQTL
3
Fine-mapped variants
2
caQTL
Date released
256
September, 2022
213
February, 2021
155
September, 2023
129
November, 2021
121
February, 2024
42
May, 2021
38
March, 2023
37
June, 2020
31
August, 2021
20
January, 2021
15
January, 2020
15
May, 2020
15
November, 2022
12
February, 2023
10
February, 2020
10
March, 2020
7
April, 2020
6
August, 2018
5
October, 2019
4
August, 2017
2
March, 2024
2
May, 2022
1
January, 2022
1
July, 2020
1
November, 2019
1
October, 2022
Available data
696
bed bed3+
339
tsv
178
bigWig
85
bed bed9
78
txt
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
1149
Homo sapiens
Biosample type
814
primary cell
153
cell line
128
tissue
53
in vitro differentiated cells
1
stem cell
Organ
906
epithelium
645
kidney
450
brain
429
connective tissue
368
musculature of body
302
lung
283
intestine
272
pancreas
250
heart
245
vasculature
242
limb
202
embryo
188
blood vessel
186
skin of body
172
bodily fluid
168
large intestine
162
blood
143
extraembryonic component
143
liver
119
stomach
103
eye
87
adipose tissue
84
small intestine
81
bone element
79
uterus
75
mammary gland
73
adrenal gland
70
placenta
70
prostate gland
69
artery
64
ureter
57
penis
50
lymph node
48
thymus
47
gonad
45
esophagus
41
spinal cord
33
spleen
25
nerve
24
lymphoid tissue
23
ovary
23
testis
23
thyroid gland
20
vein
19
lymphatic vessel
19
mouth
18
skeleton
14
bronchus
13
breast
13
pituitary gland
11
bone marrow
10
tongue
10
urinary bladder
10
vagina
4
nose
3
trachea
1
pericardium
Project
836
AMP
155
KPMP
129
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
788
hg19
321
GRCh38
annotation_type!
binding sites
BIOSAMPLE
TYPE
1149 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
candidate regulatory elements
differential activity
chromatin state
variant allelic effects
histone modifications
eQTL
Fine-mapped variants
caQTL
primary cell
endothelial cell
9
15
7
2
1
1
2
hepatocyte
13
8
3
1
1
2
4
epithelial cell of proximal tubule
16
1
1
2
1
1
glomerular endothelial cell
14
2
1
2
1
1
foreskin keratinocyte
4
11
4
+ See 151 more…
cell line
H1-hESC
8
1
39
1
1
1
EndoC_BH1
8
8
1
3
1
H9
8
7
1
H7-hESC
1
2
1
1
1
CyT49
4
1
+ See 22 more…
tissue
spinal cord
1
8
14
7
1
pigmented layer of retina
20
chorionic villus
4
8
4
breast epithelium
1
3
5
2
esophagus squamous epithelium
1
2
6
2
+ See 22 more…
in vitro differentiated cells
endodermal cell
2
4
2
mesodermal cell
1
4
1
1
retinal pigment epithelial cell
6
trophoblast cell
2
2
1
ectodermal cell
1
2
1
+ See 12 more…
stem cell
H1-hESC
1
See all biosamples
Download