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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
candidate regulatory elements
1357
target gene predictions
977
histone modifications
chromatin state
913
accessible chromatin
817
binding sites
gene expression
171
eQTL
167
differential activity
140
variant allelic effects
74
Fine-mapped variants
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Date released
1576
February, 2021
846
September, 2022
333
November, 2021
297
February, 2024
294
May, 2021
289
June, 2020
152
May, 2020
117
March, 2020
115
September, 2023
106
January, 2022
101
October, 2022
79
August, 2021
66
January, 2020
57
March, 2023
56
January, 2021
44
November, 2022
32
February, 2023
26
February, 2020
19
April, 2020
15
May, 2022
13
November, 2019
9
October, 2019
3
September, 2018
2
May, 2024
2
November, 2020
1
August, 2020
1
August, 2022
1
June, 2021
Available data
4212
bed bed3+
535
bigWig
260
tsv
16
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
Organism
4605
Homo sapiens
Biosample type
1813
cell line
1468
primary cell
1094
tissue
273
in vitro differentiated cells
3
stem cell
Organ
543
epithelium
283
connective tissue
264
brain
214
kidney
188
pancreas
147
vasculature
144
musculature of body
143
bodily fluid
138
blood
120
embryo
114
intestine
113
heart
112
blood vessel
108
lung
95
limb
92
liver
92
skin of body
81
eye
68
uterus
67
large intestine
54
extraembryonic component
49
artery
47
adipose tissue
45
bone element
44
mammary gland
42
stomach
37
prostate gland
33
lymph node
30
adrenal gland
28
placenta
27
small intestine
26
penis
23
gonad
20
ureter
19
esophagus
18
spinal cord
18
thymus
13
nerve
12
lymphatic vessel
12
pituitary gland
12
spleen
12
testis
11
skeleton
11
vein
10
bronchus
10
ovary
10
thyroid gland
9
bone marrow
9
lymphoid tissue
6
mouth
5
breast
5
trachea
4
urinary bladder
3
tongue
3
vagina
2
nose
Project
4115
AMP
333
ENCODE
110
KPMP
60
T1D
19
LungMap
11
community
5
ITG
Genome assembly (visualization)
4337
hg19
993
GRCh38
4
hg18
annotation_type!
chromatin state
gene expression
candidate regulatory elements
BIOSAMPLE
TYPE
4653 results
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Clear Filters
target gene predictions
histone modifications
accessible chromatin
binding sites
eQTL
differential activity
variant allelic effects
Fine-mapped variants
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
cell line
HeLa-S3
55
1
H1-hESC
39
1
1
2
K562
23
1
1
2
A549
19
1
1
2
breast cancer cell
11
9
+ See 735 more…
primary cell
monocyte
2
86
18
1
4
2
1
1
CD8-positive, alpha-beta T cell
5
30
4
endothelial cell
7
1
15
2
1
2
2
fibroblast
4
16
1
2
6
macrophage
3
12
7
3
1
+ See 390 more…
tissue
islet of Langerhans
1
1
6
2
13
1
2
2
2
retina
3
1
23
1
1
1
heart
20
1
5
1
2
kidney
14
2
10
1
1
1
liver
10
2
4
1
7
1
1
+ See 225 more…
in vitro differentiated cells
neural progenitor cell
5
15
10
hematopoietic multipotent progenitor cell
10
1
1
1
adipocyte
6
1
4
1
embryonic stem cell
1
1
6
1
T-cell acute lymphoblastic leukemia
5
3
+ See 100 more…
stem cell
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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