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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1671
candidate regulatory elements
1218
target gene predictions
977
histone modifications
chromatin state
817
binding sites
643
accessible chromatin
gene expression
166
eQTL
139
variant allelic effects
74
Fine-mapped variants
48
differential activity
11
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
1
pQTL
1
representative DNase hypersensitivity sites
Date released
2413
February, 2021
1678
September, 2022
298
February, 2024
294
May, 2021
289
June, 2020
152
May, 2020
117
March, 2020
106
January, 2022
99
October, 2022
74
August, 2021
66
January, 2020
48
March, 2023
44
November, 2022
31
February, 2023
26
February, 2020
15
May, 2022
13
November, 2019
9
October, 2019
5
September, 2023
3
September, 2018
2
November, 2020
1
August, 2020
1
August, 2022
1
June, 2021
Available data
5470
bed bed3+
266
bigWig
148
tsv
16
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
Organism
5739
Homo sapiens
Biosample type
2131
cell line
2026
tissue
1273
primary cell
352
in vitro differentiated cells
3
stem cell
Organ
425
epithelium
375
brain
314
kidney
296
connective tissue
279
musculature of body
227
lung
208
intestine
190
bodily fluid
189
limb
181
blood
175
embryo
174
vasculature
173
heart
172
pancreas
157
skin of body
138
blood vessel
130
large intestine
110
extraembryonic component
110
liver
95
eye
84
stomach
75
uterus
67
bone element
66
adipose tissue
66
mammary gland
64
prostate gland
60
small intestine
57
artery
55
placenta
54
lymph node
54
penis
51
ureter
48
adrenal gland
38
gonad
37
thymus
34
spinal cord
32
esophagus
27
spleen
21
testis
19
nerve
18
lymphoid tissue
17
vein
16
ovary
16
thyroid gland
15
skeleton
14
mouth
12
pituitary gland
11
bronchus
10
breast
10
lymphatic vessel
8
bone marrow
7
tongue
7
urinary bladder
7
vagina
5
trachea
3
nose
Project
5786
AMP
333
ENCODE
110
KPMP
60
T1D
19
LungMap
9
community
5
ITG
Genome assembly (visualization)
5593
hg19
657
GRCh38
4
hg18
annotation_type!
chromatin state
gene expression
BIOSAMPLE
TYPE
5786 results
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Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
accessible chromatin
eQTL
variant allelic effects
Fine-mapped variants
differential activity
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
cell line
HeLa-S3
5
55
1
A549
21
19
1
2
1
H1-hESC
1
39
1
2
1
K562
7
23
1
2
1
MCF-7
9
6
2
3
1
+ See 760 more…
tissue
heart
37
20
1
1
5
2
stomach
40
21
1
3
1
kidney
29
14
2
1
10
1
1
brain
29
16
3
1
2
2
1
lung
33
17
1
+ See 233 more…
primary cell
monocyte
1
86
1
17
4
2
1
1
CD8-positive, alpha-beta T cell
7
3
30
2
common myeloid progenitor, CD34-positive
27
14
CD14-positive monocyte
8
19
B cell
14
10
2
+ See 269 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
adipocyte
4
6
1
1
4
embryonic stem cell
1
1
1
6
mesenchymal stem cell
3
3
1
1
1
+ See 106 more…
stem cell
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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