Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
candidate regulatory elements
1324
target gene predictions
976
histone modifications
chromatin state
902
accessible chromatin
817
binding sites
679
gene expression
168
eQTL
167
differential activity
136
variant allelic effects
71
Fine-mapped variants
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Date released
1752
February, 2021
820
September, 2022
382
May, 2021
369
February, 2024
324
November, 2021
286
September, 2023
285
June, 2020
150
May, 2020
128
August, 2021
124
March, 2020
104
January, 2022
101
October, 2022
82
January, 2020
70
March, 2023
61
February, 2020
56
January, 2021
44
November, 2022
32
February, 2023
28
March, 2024
19
April, 2020
15
May, 2022
12
November, 2019
9
August, 2018
9
October, 2019
3
November, 2020
3
September, 2018
2
January, 2018
2
May, 2024
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
4163
bed bed3+
892
tsv
537
bigWig
108
txt
24
csv
16
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
Organism
5229
Homo sapiens
Biosample type
1935
primary cell
1834
cell line
1156
tissue
347
in vitro differentiated cells
3
stem cell
Organ
796
epithelium
416
kidney
332
connective tissue
283
brain
236
pancreas
183
vasculature
155
musculature of body
144
bodily fluid
139
blood
137
blood vessel
134
heart
130
embryo
117
intestine
116
liver
109
lung
100
limb
94
skin of body
82
eye
70
uterus
69
large intestine
60
adipose tissue
57
artery
54
extraembryonic component
49
bone element
44
mammary gland
stomach
38
prostate gland
33
lymph node
31
adrenal gland
28
placenta
27
small intestine
26
penis
25
gonad
21
esophagus
20
ureter
19
spinal cord
18
thymus
15
lymphatic vessel
nerve
13
pituitary gland
13
spleen
13
testis
12
vein
11
ovary
11
skeleton
11
thyroid gland
10
bronchus
10
lymphoid tissue
9
bone marrow
7
mouth
6
breast
5
trachea
5
urinary bladder
4
tongue
4
vagina
2
nose
1
pericardium
Project
4577
AMP
324
ENCODE
281
KPMP
60
T1D
19
LungMap
11
community
5
ITG
Genome assembly (visualization)
4296
hg19
985
GRCh38
4
hg18
annotation_type!
chromatin state
candidate regulatory elements
organ_slims!
nerve
stomach
BIOSAMPLE
TYPE
5277 results
search-icon
table-tab-icon
Clear Filters
target gene predictions
histone modifications
accessible chromatin
binding sites
gene expression
eQTL
differential activity
variant allelic effects
Fine-mapped variants
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
primary cell
monocyte
2
86
18
1
15
4
2
1
1
CD8-positive, alpha-beta T cell
5
30
4
3
endothelial cell
7
1
15
2
9
1
2
2
hepatocyte
3
4
8
1
13
2
fibroblast
4
16
1
2
6
+ See 435 more…
cell line
HeLa-S3
55
1
H1-hESC
39
1
1
2
8
K562
23
1
1
2
A549
19
1
1
2
EndoC_BH1
1
1
8
1
8
3
1
+ See 739 more…
tissue
islet of Langerhans
1
1
6
2
11
13
1
2
2
2
kidney
14
2
10
1
7
1
1
heart
20
1
5
1
3
2
retina
3
1
23
1
1
1
1
liver
10
2
4
1
1
7
1
1
+ See 244 more…
in vitro differentiated cells
neural progenitor cell
5
15
10
7
hematopoietic multipotent progenitor cell
10
1
1
1
1
adipocyte
6
1
4
1
1
cardiomyocytes
11
embryonic stem cell
1
1
6
1
+ See 115 more…
stem cell
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download