Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1643
candidate regulatory elements
1310
target gene predictions
971
histone modifications
chromatin state
840
accessible chromatin
812
binding sites
635
gene expression
154
eQTL
134
differential activity
129
variant allelic effects
69
Fine-mapped variants
13
caQTL
5
hQTL
3
meQTL
3
other
3
pQTL
3
sQTL
2
variant to gene
1
representative DNase hypersensitivity sites
Date released
2550
February, 2021
1641
September, 2022
351
May, 2021
348
February, 2024
315
November, 2021
286
September, 2023
285
June, 2020
146
May, 2020
120
August, 2021
119
March, 2020
102
January, 2022
101
October, 2022
79
January, 2020
62
February, 2020
44
November, 2022
36
January, 2021
31
February, 2023
30
March, 2024
23
March, 2023
19
April, 2020
15
May, 2022
11
November, 2019
3
November, 2020
3
October, 2019
3
September, 2018
2
August, 2018
1
August, 2020
1
August, 2022
1
January, 2018
1
July, 2020
Available data
5713
bed bed3+
822
tsv
479
bigWig
108
txt
21
csv
2
bigBed narrowPeak
Organism
6682
Homo sapiens
Biosample type
2146
primary cell
2130
cell line
2026
tissue
423
in vitro differentiated cells
3
stem cell
Organ
896
epithelium
575
kidney
410
connective tissue
394
brain
301
musculature of body
pancreas
240
lung
233
vasculature
230
intestine
204
heart
194
limb
191
bodily fluid
187
embryo
182
blood
176
blood vessel
169
skin of body
139
liver
138
large intestine
113
extraembryonic component
100
eye
95
stomach
79
adipose tissue
79
uterus
74
bone element
72
mammary gland
67
artery
65
prostate gland
64
small intestine
59
adrenal gland
57
placenta
54
lymph node
54
penis
51
ureter
42
gonad
38
esophagus
38
thymus
35
spinal cord
28
spleen
22
testis
21
nerve
19
lymphatic vessel
19
lymphoid tissue
19
ovary
19
thyroid gland
18
vein
15
mouth
skeleton
14
bronchus
13
pituitary gland
11
bone marrow
11
breast
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
6063
AMP
315
ENCODE
281
KPMP
40
T1D
19
LungMap
7
community
5
ITG
Genome assembly (visualization)
5836
hg19
946
GRCh38
4
hg18
annotation_type!
chromatin state
organ_slims!
skeleton
pancreas
BIOSAMPLE
TYPE
6730 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
gene expression
eQTL
differential activity
variant allelic effects
Fine-mapped variants
caQTL
hQTL
meQTL
other
pQTL
sQTL
variant to gene
representative DNase hypersensitivity sites
primary cell
monocyte
2
86
18
1
15
4
2
1
1
CD8-positive, alpha-beta T cell
7
5
30
4
3
common myeloid progenitor, CD34-positive
27
14
endothelial cell
7
1
15
2
9
1
2
2
B cell
14
10
6
2
+ See 427 more…
cell line
HeLa-S3
5
55
1
H1-hESC
1
39
1
1
2
8
A549
21
19
1
1
2
K562
7
23
1
1
2
MCF-7
9
6
2
1
3
+ See 759 more…
tissue
heart
37
20
1
5
1
3
2
stomach
40
21
1
3
1
1
kidney
29
14
2
10
1
7
1
1
brain
29
16
3
2
1
1
2
1
lung
33
17
1
1
+ See 238 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
10
7
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
4
1
1
cardiomyocytes
11
embryonic stem cell
1
1
6
1
+ See 120 more…
stem cell
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download